Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Msh4Q99MT2 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Msh4Q99MT2 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC14.12□□□□□ -0.15
Msh4Q99MT2 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC14.12□□□□□ -0.15
Msh4Q99MT2 Gm20553-201ENSMUST00000204205 844 ntBASIC14.12□□□□□ -0.15
Msh4Q99MT2 CT025555.1-201ENSMUST00000225901 1217 ntBASIC14.12□□□□□ -0.15
Msh4Q99MT2 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Msh4Q99MT2 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msh4Q99MT2 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msh4Q99MT2 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msh4Q99MT2 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
Msh4Q99MT2 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msh4Q99MT2 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC14.12□□□□□ -0.15
Msh4Q99MT2 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msh4Q99MT2 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msh4Q99MT2 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Msh4Q99MT2 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msh4Q99MT2 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC14.12□□□□□ -0.15
Msh4Q99MT2 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msh4Q99MT2 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msh4Q99MT2 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Msh4Q99MT2 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Gm11745-201ENSMUST00000121669 448 ntBASIC14.11□□□□□ -0.15
Msh4Q99MT2 Gm23547-201ENSMUST00000158210 271 ntBASIC14.11□□□□□ -0.15
Msh4Q99MT2 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Gm10313-201ENSMUST00000095320 1002 ntBASIC14.11□□□□□ -0.15
Msh4Q99MT2 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Msh4Q99MT2 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Msh4Q99MT2 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC14.1□□□□□ -0.15
Msh4Q99MT2 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC14.1□□□□□ -0.15
Msh4Q99MT2 AC164567.1-201ENSMUST00000219185 960 ntBASIC14.1□□□□□ -0.15
Msh4Q99MT2 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Gpr146-202ENSMUST00000053120 1040 ntBASIC14.1□□□□□ -0.15
Msh4Q99MT2 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Msh4Q99MT2 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Gm13332-201ENSMUST00000120451 1398 ntBASIC14.09□□□□□ -0.15
Msh4Q99MT2 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC14.09□□□□□ -0.15
Msh4Q99MT2 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Mxra8os-201ENSMUST00000097740 687 ntBASIC14.09□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 47.2 ms