Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Cdk5rap3Q99LM2 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC15.02■□□□□ -0
Cdk5rap3Q99LM2 Gm14042-201ENSMUST00000120139 833 ntBASIC15.02■□□□□ -0
Cdk5rap3Q99LM2 Gm13597-201ENSMUST00000121239 375 ntBASIC15.02■□□□□ -0
Cdk5rap3Q99LM2 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC15.02■□□□□ -0
Cdk5rap3Q99LM2 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Cdk5rap3Q99LM2 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC15.02■□□□□ -0
Cdk5rap3Q99LM2 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
Cdk5rap3Q99LM2 Gm6944-201ENSMUST00000182449 1006 ntBASIC15.02■□□□□ -0
Cdk5rap3Q99LM2 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Cdk5rap3Q99LM2 AC084391.1-201ENSMUST00000200651 141 ntBASIC15.02■□□□□ -0
Cdk5rap3Q99LM2 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Cdk5rap3Q99LM2 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Cdk5rap3Q99LM2 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Cdk5rap3Q99LM2 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC15.02■□□□□ -0
Cdk5rap3Q99LM2 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Cdk5rap3Q99LM2 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Cdk5rap3Q99LM2 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Cdk5rap3Q99LM2 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Cdk5rap3Q99LM2 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
Cdk5rap3Q99LM2 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Cdk5rap3Q99LM2 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Cdk5rap3Q99LM2 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
Cdk5rap3Q99LM2 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Cdk5rap3Q99LM2 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Cdk5rap3Q99LM2 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 AC164565.1-201ENSMUST00000217520 1484 ntBASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Mir5126-201ENSMUST00000175513 77 ntBASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Gm44291-201ENSMUST00000203102 2865 ntBASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Gm28182-201ENSMUST00000188354 2477 ntBASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Cdk5rap3Q99LM2 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Gm16026-204ENSMUST00000162652 683 ntBASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Mir5131-201ENSMUST00000175426 93 ntBASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 AC166574.6-201ENSMUST00000227889 1806 ntBASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Cdk5rap3Q99LM2 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdk5rap3Q99LM2 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdk5rap3Q99LM2 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdk5rap3Q99LM2 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdk5rap3Q99LM2 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Cdk5rap3Q99LM2 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdk5rap3Q99LM2 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Cdk5rap3Q99LM2 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdk5rap3Q99LM2 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdk5rap3Q99LM2 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC14.99□□□□□ -0.01
Cdk5rap3Q99LM2 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC14.99□□□□□ -0.01
Cdk5rap3Q99LM2 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC14.99□□□□□ -0.01
Cdk5rap3Q99LM2 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC14.99□□□□□ -0.01
Cdk5rap3Q99LM2 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Cdk5rap3Q99LM2 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC14.99□□□□□ -0.01
Cdk5rap3Q99LM2 Gm10154-201ENSMUST00000084445 354 ntBASIC14.99□□□□□ -0.01
Cdk5rap3Q99LM2 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
Cdk5rap3Q99LM2 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Cdk5rap3Q99LM2 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms