Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
Usp47Q8BY87 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Usp47Q8BY87 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Usp47Q8BY87 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Usp47Q8BY87 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Usp47Q8BY87 Gm22189-201ENSMUST00000103822 86 ntBASIC20.35■□□□□ 0.85
Usp47Q8BY87 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC20.35■□□□□ 0.85
Usp47Q8BY87 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC20.35■□□□□ 0.85
Usp47Q8BY87 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC20.35■□□□□ 0.85
Usp47Q8BY87 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Usp47Q8BY87 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Usp47Q8BY87 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Usp47Q8BY87 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Usp47Q8BY87 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Usp47Q8BY87 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Usp47Q8BY87 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Usp47Q8BY87 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Usp47Q8BY87 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Usp47Q8BY87 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Usp47Q8BY87 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Usp47Q8BY87 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC20.34■□□□□ 0.85
Usp47Q8BY87 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Usp47Q8BY87 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC20.34■□□□□ 0.85
Usp47Q8BY87 Gm7390-201ENSMUST00000212452 1216 ntBASIC20.34■□□□□ 0.85
Usp47Q8BY87 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC20.34■□□□□ 0.85
Usp47Q8BY87 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC20.34■□□□□ 0.85
Usp47Q8BY87 Hist1h2al-201ENSMUST00000091708 339 ntBASIC20.34■□□□□ 0.85
Usp47Q8BY87 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Usp47Q8BY87 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Usp47Q8BY87 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Usp47Q8BY87 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Usp47Q8BY87 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Usp47Q8BY87 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Usp47Q8BY87 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Usp47Q8BY87 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Usp47Q8BY87 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Usp47Q8BY87 Gm15460-201ENSMUST00000118147 391 ntBASIC20.34■□□□□ 0.85
Usp47Q8BY87 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Usp47Q8BY87 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC20.34■□□□□ 0.85
Usp47Q8BY87 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Usp47Q8BY87 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Usp47Q8BY87 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Usp47Q8BY87 Gm45133-201ENSMUST00000207548 2773 ntBASIC20.34■□□□□ 0.85
Usp47Q8BY87 Gm7730-201ENSMUST00000212486 454 ntBASIC20.34■□□□□ 0.85
Usp47Q8BY87 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Usp47Q8BY87 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Usp47Q8BY87 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Usp47Q8BY87 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Usp47Q8BY87 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Usp47Q8BY87 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Usp47Q8BY87 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Usp47Q8BY87 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Usp47Q8BY87 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC20.33■□□□□ 0.84
Usp47Q8BY87 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Usp47Q8BY87 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Usp47Q8BY87 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
Usp47Q8BY87 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Usp47Q8BY87 Gm3365-201ENSMUST00000216296 1480 ntBASIC20.33■□□□□ 0.84
Usp47Q8BY87 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Usp47Q8BY87 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Usp47Q8BY87 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.84
Usp47Q8BY87 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC20.33■□□□□ 0.84
Usp47Q8BY87 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC20.33■□□□□ 0.84
Usp47Q8BY87 Ighv1-25-201ENSMUST00000195638 345 ntBASIC20.33■□□□□ 0.84
Usp47Q8BY87 Gm44855-201ENSMUST00000205725 362 ntBASIC20.33■□□□□ 0.84
Usp47Q8BY87 Gm44608-201ENSMUST00000206827 855 ntBASIC20.33■□□□□ 0.84
Usp47Q8BY87 AC124732.1-201ENSMUST00000221551 910 ntBASIC20.33■□□□□ 0.84
Usp47Q8BY87 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Usp47Q8BY87 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Usp47Q8BY87 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
Usp47Q8BY87 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC20.32■□□□□ 0.84
Usp47Q8BY87 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp47Q8BY87 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp47Q8BY87 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp47Q8BY87 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Usp47Q8BY87 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC20.32■□□□□ 0.84
Usp47Q8BY87 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp47Q8BY87 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp47Q8BY87 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Usp47Q8BY87 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC20.32■□□□□ 0.84
Usp47Q8BY87 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp47Q8BY87 Gm5866-201ENSMUST00000177881 973 ntBASIC20.32■□□□□ 0.84
Usp47Q8BY87 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Usp47Q8BY87 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC20.32■□□□□ 0.84
Usp47Q8BY87 Gm6473-201ENSMUST00000188572 1210 ntBASIC20.32■□□□□ 0.84
Usp47Q8BY87 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Usp47Q8BY87 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp47Q8BY87 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Gm9109-201ENSMUST00000120254 1405 ntBASIC20.31■□□□□ 0.84
Usp47Q8BY87 Gm37297-201ENSMUST00000192974 2384 ntBASIC20.31■□□□□ 0.84
Usp47Q8BY87 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms