Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Gm24543-201ENSMUST00000103867 82 ntBASIC17.07■□□□□ 0.32
Trim56Q80VI1 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Gm17837-201ENSMUST00000186435 985 ntBASIC17.07■□□□□ 0.32
Trim56Q80VI1 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim56Q80VI1 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Gm16476-201ENSMUST00000221544 139 ntBASIC17.06■□□□□ 0.32
Trim56Q80VI1 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 BC001981-202ENSMUST00000191393 1545 ntBASIC17.06■□□□□ 0.32
Trim56Q80VI1 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Gm10676-201ENSMUST00000098778 3221 ntBASIC17.06■□□□□ 0.32
Trim56Q80VI1 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim56Q80VI1 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim56Q80VI1 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim56Q80VI1 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim56Q80VI1 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim56Q80VI1 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim56Q80VI1 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim56Q80VI1 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC17.05■□□□□ 0.32
Trim56Q80VI1 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim56Q80VI1 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC17.05■□□□□ 0.32
Trim56Q80VI1 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trim56Q80VI1 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trim56Q80VI1 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim56Q80VI1 Gm25144-201ENSMUST00000179561 110 ntBASIC17.05■□□□□ 0.32
Trim56Q80VI1 Gm25352-201ENSMUST00000179815 110 ntBASIC17.05■□□□□ 0.32
Trim56Q80VI1 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC17.05■□□□□ 0.32
Trim56Q80VI1 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC17.05■□□□□ 0.32
Trim56Q80VI1 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC17.05■□□□□ 0.32
Trim56Q80VI1 AC155729.1-201ENSMUST00000227758 544 ntBASIC17.05■□□□□ 0.32
Trim56Q80VI1 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Trim56Q80VI1 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim56Q80VI1 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim56Q80VI1 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim56Q80VI1 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim56Q80VI1 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim56Q80VI1 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trim56Q80VI1 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Mir1897-201ENSMUST00000122581 272 ntBASIC17.04■□□□□ 0.32
Trim56Q80VI1 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim56Q80VI1 AC121598.1-201ENSMUST00000228224 1019 ntBASIC17.04■□□□□ 0.32
Trim56Q80VI1 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim56Q80VI1 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
Trim56Q80VI1 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 65 ms