Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
Ddx55Q6ZPL9 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Ddx55Q6ZPL9 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx55Q6ZPL9 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC16.37■□□□□ 0.21
Ddx55Q6ZPL9 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx55Q6ZPL9 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx55Q6ZPL9 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx55Q6ZPL9 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Ddx55Q6ZPL9 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx55Q6ZPL9 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx55Q6ZPL9 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx55Q6ZPL9 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Ddx55Q6ZPL9 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx55Q6ZPL9 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx55Q6ZPL9 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC16.37■□□□□ 0.21
Ddx55Q6ZPL9 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Ddx55Q6ZPL9 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Gm13392-201ENSMUST00000117708 150 ntBASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Mup-ps23-201ENSMUST00000118063 630 ntBASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Rassf8-202ENSMUST00000058538 1131 ntBASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ddx55Q6ZPL9 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Gm27486-201ENSMUST00000184923 80 ntBASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Gm18905-201ENSMUST00000205454 928 ntBASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 AC125117.1-201ENSMUST00000228121 468 ntBASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 CT010478.1-201ENSMUST00000220747 2787 ntBASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ddx55Q6ZPL9 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx55Q6ZPL9 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx55Q6ZPL9 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx55Q6ZPL9 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC16.34■□□□□ 0.21
Ddx55Q6ZPL9 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx55Q6ZPL9 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC16.34■□□□□ 0.21
Ddx55Q6ZPL9 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx55Q6ZPL9 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx55Q6ZPL9 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Ddx55Q6ZPL9 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx55Q6ZPL9 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
Ddx55Q6ZPL9 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx55Q6ZPL9 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Ddx55Q6ZPL9 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx55Q6ZPL9 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx55Q6ZPL9 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx55Q6ZPL9 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx55Q6ZPL9 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx55Q6ZPL9 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ddx55Q6ZPL9 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC16.34■□□□□ 0.21
Ddx55Q6ZPL9 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 72 ms