Protein–RNA interactions for Protein: Q64347

Clcn1, Chloride channel protein 1, mousemouse

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn1Q64347 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Clcn1Q64347 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clcn1Q64347 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Clcn1Q64347 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clcn1Q64347 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC18.3■□□□□ 0.52
Clcn1Q64347 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Clcn1Q64347 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Clcn1Q64347 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC18.3■□□□□ 0.52
Clcn1Q64347 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC18.3■□□□□ 0.52
Clcn1Q64347 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Clcn1Q64347 Gm9229-201ENSMUST00000222777 126 ntBASIC18.3■□□□□ 0.52
Clcn1Q64347 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clcn1Q64347 Mir125a-201ENSMUST00000083545 68 ntBASIC18.3■□□□□ 0.52
Clcn1Q64347 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clcn1Q64347 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC18.3■□□□□ 0.52
Clcn1Q64347 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC18.3■□□□□ 0.52
Clcn1Q64347 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clcn1Q64347 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Clcn1Q64347 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Clcn1Q64347 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clcn1Q64347 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clcn1Q64347 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Clcn1Q64347 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Clcn1Q64347 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC18.3■□□□□ 0.52
Clcn1Q64347 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Clcn1Q64347 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clcn1Q64347 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Clcn1Q64347 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Clcn1Q64347 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC18.3■□□□□ 0.52
Clcn1Q64347 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clcn1Q64347 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clcn1Q64347 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clcn1Q64347 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clcn1Q64347 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clcn1Q64347 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Clcn1Q64347 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clcn1Q64347 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clcn1Q64347 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Clcn1Q64347 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clcn1Q64347 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC18.29■□□□□ 0.52
Clcn1Q64347 Gm8602-201ENSMUST00000184045 607 ntBASIC18.29■□□□□ 0.52
Clcn1Q64347 AC125350.2-201ENSMUST00000224737 727 ntBASIC18.29■□□□□ 0.52
Clcn1Q64347 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Clcn1Q64347 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Clcn1Q64347 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC18.29■□□□□ 0.52
Clcn1Q64347 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
Clcn1Q64347 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clcn1Q64347 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Clcn1Q64347 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Clcn1Q64347 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Clcn1Q64347 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clcn1Q64347 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
Clcn1Q64347 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clcn1Q64347 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Clcn1Q64347 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clcn1Q64347 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clcn1Q64347 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clcn1Q64347 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Clcn1Q64347 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clcn1Q64347 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Clcn1Q64347 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Clcn1Q64347 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Clcn1Q64347 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Clcn1Q64347 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clcn1Q64347 Gm31326-201ENSMUST00000191856 1048 ntBASIC18.28■□□□□ 0.52
Clcn1Q64347 Gm37917-201ENSMUST00000194711 392 ntBASIC18.28■□□□□ 0.52
Clcn1Q64347 Rpl7-201ENSMUST00000058437 1163 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clcn1Q64347 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Clcn1Q64347 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Clcn1Q64347 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clcn1Q64347 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clcn1Q64347 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clcn1Q64347 Gm11839-201ENSMUST00000120647 1953 ntBASIC18.28■□□□□ 0.52
Clcn1Q64347 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clcn1Q64347 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Clcn1Q64347 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clcn1Q64347 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clcn1Q64347 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Clcn1Q64347 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Clcn1Q64347 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Clcn1Q64347 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Clcn1Q64347 Gm27528-202ENSMUST00000222916 2012 ntBASIC18.27■□□□□ 0.52
Clcn1Q64347 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Clcn1Q64347 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Clcn1Q64347 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC18.27■□□□□ 0.52
Clcn1Q64347 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Clcn1Q64347 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Clcn1Q64347 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Clcn1Q64347 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC18.27■□□□□ 0.52
Clcn1Q64347 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC18.27■□□□□ 0.52
Clcn1Q64347 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC18.27■□□□□ 0.52
Clcn1Q64347 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC18.27■□□□□ 0.52
Clcn1Q64347 Gm9726-201ENSMUST00000180321 678 ntBASIC18.27■□□□□ 0.52
Clcn1Q64347 Mir7085-201ENSMUST00000184353 66 ntBASIC18.27■□□□□ 0.52
Clcn1Q64347 Gm28760-201ENSMUST00000185995 736 ntBASIC18.27■□□□□ 0.52
Clcn1Q64347 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
Clcn1Q64347 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC18.27■□□□□ 0.52
Clcn1Q64347 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC18.27■□□□□ 0.52
Clcn1Q64347 AC154846.1-201ENSMUST00000226278 862 ntBASIC18.27■□□□□ 0.52
Clcn1Q64347 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms