Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col11a1Q61245 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col11a1Q61245 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col11a1Q61245 Gm6203-201ENSMUST00000209575 1342 ntBASIC15.91■□□□□ 0.14
Col11a1Q61245 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col11a1Q61245 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col11a1Q61245 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col11a1Q61245 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col11a1Q61245 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
Col11a1Q61245 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
Col11a1Q61245 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col11a1Q61245 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC15.91■□□□□ 0.14
Col11a1Q61245 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC15.91■□□□□ 0.14
Col11a1Q61245 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC15.91■□□□□ 0.14
Col11a1Q61245 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC15.91■□□□□ 0.14
Col11a1Q61245 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC15.91■□□□□ 0.14
Col11a1Q61245 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col11a1Q61245 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col11a1Q61245 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col11a1Q61245 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC15.91■□□□□ 0.14
Col11a1Q61245 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Col11a1Q61245 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col11a1Q61245 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col11a1Q61245 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC15.9■□□□□ 0.14
Col11a1Q61245 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col11a1Q61245 Gm7029-201ENSMUST00000173226 450 ntBASIC15.9■□□□□ 0.14
Col11a1Q61245 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Col11a1Q61245 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col11a1Q61245 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col11a1Q61245 Gm8706-201ENSMUST00000197372 1491 ntBASIC15.9■□□□□ 0.14
Col11a1Q61245 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
Col11a1Q61245 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col11a1Q61245 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col11a1Q61245 AC174678.1-201ENSMUST00000228007 2749 ntBASIC15.9■□□□□ 0.14
Col11a1Q61245 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC15.9■□□□□ 0.14
Col11a1Q61245 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Col11a1Q61245 Gm12846-201ENSMUST00000120431 1373 ntBASIC15.9■□□□□ 0.14
Col11a1Q61245 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col11a1Q61245 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC15.89■□□□□ 0.13
Col11a1Q61245 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC15.89■□□□□ 0.13
Col11a1Q61245 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC15.89■□□□□ 0.13
Col11a1Q61245 Gm38000-201ENSMUST00000192390 1215 ntBASIC15.89■□□□□ 0.13
Col11a1Q61245 Gm5850-201ENSMUST00000192923 1206 ntBASIC15.89■□□□□ 0.13
Col11a1Q61245 Gm37466-201ENSMUST00000195692 652 ntBASIC15.89■□□□□ 0.13
Col11a1Q61245 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC15.89■□□□□ 0.13
Col11a1Q61245 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC15.89■□□□□ 0.13
Col11a1Q61245 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC15.89■□□□□ 0.13
Col11a1Q61245 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
Col11a1Q61245 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 Gm13342-201ENSMUST00000121055 207 ntBASIC15.89■□□□□ 0.13
Col11a1Q61245 Gm1335-201ENSMUST00000121653 386 ntBASIC15.89■□□□□ 0.13
Col11a1Q61245 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC15.89■□□□□ 0.13
Col11a1Q61245 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC15.89■□□□□ 0.13
Col11a1Q61245 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Col11a1Q61245 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Col11a1Q61245 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col11a1Q61245 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col11a1Q61245 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col11a1Q61245 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col11a1Q61245 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC15.88■□□□□ 0.13
Col11a1Q61245 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col11a1Q61245 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col11a1Q61245 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col11a1Q61245 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col11a1Q61245 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col11a1Q61245 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col11a1Q61245 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC15.88■□□□□ 0.13
Col11a1Q61245 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC15.88■□□□□ 0.13
Col11a1Q61245 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Col11a1Q61245 Gm6334-201ENSMUST00000207083 228 ntBASIC15.88■□□□□ 0.13
Col11a1Q61245 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
Col11a1Q61245 Gm42632-201ENSMUST00000201707 2411 ntBASIC15.88■□□□□ 0.13
Col11a1Q61245 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Col11a1Q61245 Gm7993-201ENSMUST00000200970 1384 ntBASIC15.88■□□□□ 0.13
Col11a1Q61245 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC15.88■□□□□ 0.13
Col11a1Q61245 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col11a1Q61245 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
Col11a1Q61245 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Col11a1Q61245 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Col11a1Q61245 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Col11a1Q61245 Ssr1-204ENSMUST00000225319 1610 ntBASIC15.87■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms