Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Ighv8-7-201ENSMUST00000194349 297 ntBASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Gm43474-201ENSMUST00000196415 774 ntBASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Upf3bQ3ULL6 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Upf3bQ3ULL6 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Gm25287-201ENSMUST00000103846 110 ntBASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Gm22918-201ENSMUST00000103855 110 ntBASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Gm9252-201ENSMUST00000172364 1602 ntBASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Gm37297-201ENSMUST00000192974 2384 ntBASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Upf3bQ3ULL6 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Upf3bQ3ULL6 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms