Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col9a1Q05722 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Col9a1Q05722 Olfr1230-201ENSMUST00000099787 918 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Col9a1Q05722 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col9a1Q05722 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col9a1Q05722 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Col9a1Q05722 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col9a1Q05722 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col9a1Q05722 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col9a1Q05722 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col9a1Q05722 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
Col9a1Q05722 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col9a1Q05722 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col9a1Q05722 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col9a1Q05722 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col9a1Q05722 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC14.15□□□□□ -0.14
Col9a1Q05722 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col9a1Q05722 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col9a1Q05722 Gm2606-201ENSMUST00000100754 1002 ntBASIC14.15□□□□□ -0.14
Col9a1Q05722 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Col9a1Q05722 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Col9a1Q05722 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Col9a1Q05722 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Col9a1Q05722 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Col9a1Q05722 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Col9a1Q05722 Gm12537-201ENSMUST00000119266 1002 ntBASIC14.15□□□□□ -0.14
Col9a1Q05722 Gm12070-201ENSMUST00000119551 1002 ntBASIC14.15□□□□□ -0.14
Col9a1Q05722 Gm12671-201ENSMUST00000119978 1002 ntBASIC14.15□□□□□ -0.14
Col9a1Q05722 Gm13292-201ENSMUST00000120014 1000 ntBASIC14.15□□□□□ -0.14
Col9a1Q05722 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col9a1Q05722 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC14.15□□□□□ -0.14
Col9a1Q05722 Gm15593-201ENSMUST00000122085 1008 ntBASIC14.15□□□□□ -0.14
Col9a1Q05722 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Col9a1Q05722 Gm5656-201ENSMUST00000171020 1096 ntBASIC14.15□□□□□ -0.14
Col9a1Q05722 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
Col9a1Q05722 Gm10359-201ENSMUST00000180167 1002 ntBASIC14.15□□□□□ -0.14
Col9a1Q05722 Gm26736-201ENSMUST00000180425 1236 ntBASIC14.15□□□□□ -0.14
Col9a1Q05722 Gm12033-201ENSMUST00000180654 1002 ntBASIC14.15□□□□□ -0.14
Col9a1Q05722 Gm5559-201ENSMUST00000180755 1002 ntBASIC14.15□□□□□ -0.14
Col9a1Q05722 Gm10608-202ENSMUST00000213924 676 ntBASIC14.15□□□□□ -0.14
Col9a1Q05722 Gm7293-201ENSMUST00000216682 1007 ntBASIC14.15□□□□□ -0.14
Col9a1Q05722 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col9a1Q05722 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col9a1Q05722 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC14.15□□□□□ -0.14
Col9a1Q05722 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col9a1Q05722 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col9a1Q05722 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col9a1Q05722 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col9a1Q05722 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col9a1Q05722 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col9a1Q05722 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col9a1Q05722 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col9a1Q05722 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col9a1Q05722 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col9a1Q05722 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.15
Col9a1Q05722 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.15
Col9a1Q05722 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col9a1Q05722 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Col9a1Q05722 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col9a1Q05722 Gm10339-203ENSMUST00000225409 1671 ntBASIC14.14□□□□□ -0.15
Col9a1Q05722 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col9a1Q05722 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col9a1Q05722 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
Col9a1Q05722 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col9a1Q05722 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col9a1Q05722 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col9a1Q05722 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col9a1Q05722 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col9a1Q05722 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC14.14□□□□□ -0.15
Col9a1Q05722 Gm24380-201ENSMUST00000122696 324 ntBASIC14.14□□□□□ -0.15
Col9a1Q05722 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC14.14□□□□□ -0.15
Col9a1Q05722 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC14.14□□□□□ -0.15
Col9a1Q05722 Gm42474-201ENSMUST00000201073 505 ntBASIC14.14□□□□□ -0.15
Col9a1Q05722 Gm44683-201ENSMUST00000209088 484 ntBASIC14.14□□□□□ -0.15
Col9a1Q05722 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col9a1Q05722 AC159205.7-201ENSMUST00000225988 692 ntBASIC14.14□□□□□ -0.15
Col9a1Q05722 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col9a1Q05722 Olfr1281-201ENSMUST00000090326 918 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Col9a1Q05722 Gm43980-201ENSMUST00000204899 1612 ntBASIC14.14□□□□□ -0.15
Col9a1Q05722 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col9a1Q05722 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col9a1Q05722 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC14.14□□□□□ -0.15
Col9a1Q05722 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col9a1Q05722 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col9a1Q05722 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col9a1Q05722 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col9a1Q05722 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Col9a1Q05722 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col9a1Q05722 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC14.13□□□□□ -0.15
Col9a1Q05722 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col9a1Q05722 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col9a1Q05722 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col9a1Q05722 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col9a1Q05722 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col9a1Q05722 Gm13505-201ENSMUST00000121666 817 ntBASIC14.13□□□□□ -0.15
Col9a1Q05722 Gm15171-201ENSMUST00000122191 334 ntBASIC14.13□□□□□ -0.15
Col9a1Q05722 Gm10156-201ENSMUST00000122364 462 ntBASIC14.13□□□□□ -0.15
Col9a1Q05722 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col9a1Q05722 Gm12249-201ENSMUST00000132323 719 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Col9a1Q05722 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms