Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
Nkx3-1P97436 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Gm12490-201ENSMUST00000120255 560 ntBASIC12.5□□□□□ -0.41
Nkx3-1P97436 Gm9726-201ENSMUST00000180321 678 ntBASIC12.5□□□□□ -0.41
Nkx3-1P97436 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx3-1P97436 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC12.5□□□□□ -0.41
Nkx3-1P97436 Gm10584-201ENSMUST00000207036 2628 ntBASIC12.5□□□□□ -0.41
Nkx3-1P97436 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Gm43438-201ENSMUST00000198133 379 ntBASIC12.49□□□□□ -0.41
Nkx3-1P97436 Olfr286-202ENSMUST00000205305 969 ntBASIC12.49□□□□□ -0.41
Nkx3-1P97436 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Nkx3-1P97436 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx3-1P97436 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Nkx3-1P97436 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Gm28631-201ENSMUST00000190740 334 ntBASIC12.48□□□□□ -0.41
Nkx3-1P97436 Gm37230-201ENSMUST00000194491 818 ntBASIC12.48□□□□□ -0.41
Nkx3-1P97436 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx3-1P97436 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC12.48□□□□□ -0.41
Nkx3-1P97436 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Hist1h2al-201ENSMUST00000091708 339 ntBASIC12.48□□□□□ -0.41
Nkx3-1P97436 Gm11960-202ENSMUST00000181063 2858 ntBASIC12.48□□□□□ -0.41
Nkx3-1P97436 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Gm11839-201ENSMUST00000120647 1953 ntBASIC12.48□□□□□ -0.41
Nkx3-1P97436 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx3-1P97436 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx3-1P97436 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Nkx3-1P97436 Gm21009-201ENSMUST00000197169 1669 ntBASIC12.48□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms