Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
Cux1P53564 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Cux1P53564 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Cux1P53564 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
Cux1P53564 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC21.94■■□□□ 1.1
Cux1P53564 Gm11557-201ENSMUST00000120200 1008 ntBASIC21.94■■□□□ 1.1
Cux1P53564 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC21.94■■□□□ 1.1
Cux1P53564 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Cux1P53564 Gm8927-201ENSMUST00000181978 981 ntBASIC21.94■■□□□ 1.1
Cux1P53564 Gm27486-201ENSMUST00000184923 80 ntBASIC21.94■■□□□ 1.1
Cux1P53564 Gm42442-201ENSMUST00000197951 1133 ntBASIC21.94■■□□□ 1.1
Cux1P53564 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC21.94■■□□□ 1.1
Cux1P53564 Gm3222-201ENSMUST00000071282 990 ntBASIC21.94■■□□□ 1.1
Cux1P53564 Gm10012-201ENSMUST00000078252 192 ntBASIC21.94■■□□□ 1.1
Cux1P53564 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
Cux1P53564 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Cux1P53564 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Cux1P53564 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
Cux1P53564 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Cux1P53564 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
Cux1P53564 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC21.93■■□□□ 1.1
Cux1P53564 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Cux1P53564 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC21.93■■□□□ 1.1
Cux1P53564 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Cux1P53564 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Cux1P53564 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Cux1P53564 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Cux1P53564 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
Cux1P53564 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Cux1P53564 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Cux1P53564 AC121801.1-201ENSMUST00000225363 1899 ntBASIC21.93■■□□□ 1.1
Cux1P53564 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Cux1P53564 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
Cux1P53564 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Cux1P53564 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Cux1P53564 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
Cux1P53564 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Cux1P53564 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Cux1P53564 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Cux1P53564 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC21.92■■□□□ 1.1
Cux1P53564 Gm45630-201ENSMUST00000210243 1911 ntBASIC21.92■■□□□ 1.1
Cux1P53564 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC21.92■■□□□ 1.1
Cux1P53564 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC21.92■■□□□ 1.1
Cux1P53564 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Cux1P53564 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Cux1P53564 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Cux1P53564 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Cux1P53564 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Cux1P53564 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC21.92■■□□□ 1.1
Cux1P53564 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Cux1P53564 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Cux1P53564 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC21.92■■□□□ 1.1
Cux1P53564 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC21.92■■□□□ 1.1
Cux1P53564 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Cux1P53564 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Cux1P53564 Gm38319-201ENSMUST00000194537 1266 ntBASIC21.91■■□□□ 1.1
Cux1P53564 Gm42693-201ENSMUST00000196779 631 ntBASIC21.91■■□□□ 1.1
Cux1P53564 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC21.91■■□□□ 1.1
Cux1P53564 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC21.91■■□□□ 1.1
Cux1P53564 Gm10478-201ENSMUST00000084451 396 ntBASIC21.91■■□□□ 1.1
Cux1P53564 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Cux1P53564 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC21.91■■□□□ 1.1
Cux1P53564 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Cux1P53564 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Cux1P53564 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Cux1P53564 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Cux1P53564 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
Cux1P53564 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Cux1P53564 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Cux1P53564 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC21.9■■□□□ 1.1
Cux1P53564 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Cux1P53564 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC21.9■■□□□ 1.1
Cux1P53564 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Cux1P53564 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC21.9■■□□□ 1.1
Cux1P53564 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Cux1P53564 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Cux1P53564 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Cux1P53564 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Cux1P53564 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Cux1P53564 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Cux1P53564 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
Cux1P53564 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Cux1P53564 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Cux1P53564 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Cux1P53564 Gm16342-201ENSMUST00000124025 1025 ntBASIC21.9■■□□□ 1.1
Cux1P53564 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Cux1P53564 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
Cux1P53564 Gm27772-201ENSMUST00000184900 187 ntBASIC21.9■■□□□ 1.1
Cux1P53564 Gm38230-201ENSMUST00000193572 1159 ntBASIC21.9■■□□□ 1.1
Cux1P53564 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Cux1P53564 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Cux1P53564 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Cux1P53564 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Cux1P53564 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Cux1P53564 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Cux1P53564 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
Cux1P53564 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
Cux1P53564 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Cux1P53564 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Cux1P53564 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC21.89■■□□□ 1.09
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms