Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rfx1P48377 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rfx1P48377 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rfx1P48377 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Rfx1P48377 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rfx1P48377 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rfx1P48377 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
Rfx1P48377 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rfx1P48377 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rfx1P48377 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rfx1P48377 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rfx1P48377 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC17.33■□□□□ 0.36
Rfx1P48377 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Rfx1P48377 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rfx1P48377 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC17.32■□□□□ 0.36
Rfx1P48377 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Gm43570-201ENSMUST00000199951 3688 ntBASIC17.32■□□□□ 0.36
Rfx1P48377 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Gm37019-201ENSMUST00000192133 2134 ntBASIC17.32■□□□□ 0.36
Rfx1P48377 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Rfx1P48377 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC17.32■□□□□ 0.36
Rfx1P48377 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC17.32■□□□□ 0.36
Rfx1P48377 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC17.32■□□□□ 0.36
Rfx1P48377 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
Rfx1P48377 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC17.32■□□□□ 0.36
Rfx1P48377 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Rfx1P48377 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Rfx1P48377 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Rfx1P48377 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
Rfx1P48377 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx1P48377 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx1P48377 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx1P48377 AC025913.2-201ENSMUST00000220136 1766 ntBASIC17.31■□□□□ 0.36
Rfx1P48377 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx1P48377 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
Rfx1P48377 Gm25990-201ENSMUST00000102440 86 ntBASIC17.31■□□□□ 0.36
Rfx1P48377 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx1P48377 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx1P48377 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx1P48377 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC17.31■□□□□ 0.36
Rfx1P48377 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx1P48377 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC17.31■□□□□ 0.36
Rfx1P48377 Gm45167-201ENSMUST00000208007 322 ntBASIC17.31■□□□□ 0.36
Rfx1P48377 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx1P48377 AC130671.1-201ENSMUST00000227384 1237 ntBASIC17.31■□□□□ 0.36
Rfx1P48377 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx1P48377 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx1P48377 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx1P48377 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC17.31■□□□□ 0.36
Rfx1P48377 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx1P48377 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx1P48377 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Rfx1P48377 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx1P48377 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Rfx1P48377 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rfx1P48377 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Rfx1P48377 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Rfx1P48377 Best4-ps-201ENSMUST00000129783 1380 ntBASIC17.3■□□□□ 0.36
Rfx1P48377 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rfx1P48377 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rfx1P48377 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Rfx1P48377 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rfx1P48377 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rfx1P48377 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Rfx1P48377 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC17.3■□□□□ 0.36
Rfx1P48377 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC17.3■□□□□ 0.36
Rfx1P48377 Gm15593-201ENSMUST00000122085 1008 ntBASIC17.3■□□□□ 0.36
Rfx1P48377 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Rfx1P48377 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Rfx1P48377 Gm18669-201ENSMUST00000216049 778 ntBASIC17.3■□□□□ 0.36
Rfx1P48377 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rfx1P48377 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Rfx1P48377 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rfx1P48377 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Rfx1P48377 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rfx1P48377 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Rfx1P48377 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Rfx1P48377 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Rfx1P48377 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx1P48377 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC17.29■□□□□ 0.36
Rfx1P48377 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx1P48377 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms