Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Traf1P39428 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
Traf1P39428 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC16.75■□□□□ 0.27
Traf1P39428 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Traf1P39428 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Traf1P39428 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Traf1P39428 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Traf1P39428 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC16.75■□□□□ 0.27
Traf1P39428 Gm15653-201ENSMUST00000119247 907 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Traf1P39428 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC16.75■□□□□ 0.27
Traf1P39428 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Traf1P39428 Gm29310-201ENSMUST00000185468 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm21825-201ENSMUST00000185728 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm29109-201ENSMUST00000185895 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm21896-201ENSMUST00000186520 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm21873-201ENSMUST00000186728 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm21794-201ENSMUST00000187056 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm21880-201ENSMUST00000187275 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm21826-201ENSMUST00000187451 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm21198-201ENSMUST00000188393 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm21749-201ENSMUST00000189343 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm21901-201ENSMUST00000189568 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm29424-201ENSMUST00000189716 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm28599-201ENSMUST00000189838 694 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm21867-201ENSMUST00000189917 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm29269-201ENSMUST00000190087 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm21722-201ENSMUST00000190153 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm28423-201ENSMUST00000190701 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm21899-201ENSMUST00000190745 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm21910-201ENSMUST00000191163 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm21849-201ENSMUST00000191571 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm28678-201ENSMUST00000191593 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Traf1P39428 Gm38294-201ENSMUST00000192831 381 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm20910-201ENSMUST00000193268 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Traf1P39428 Gm21871-201ENSMUST00000194621 696 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm44344-201ENSMUST00000200287 129 ntBASIC16.75■□□□□ 0.27
Traf1P39428 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC16.75■□□□□ 0.27
Traf1P39428 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Traf1P39428 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Traf1P39428 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Traf1P39428 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Traf1P39428 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Traf1P39428 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Traf1P39428 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Traf1P39428 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Traf1P39428 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Traf1P39428 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Traf1P39428 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Traf1P39428 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Traf1P39428 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Traf1P39428 Gm45546-201ENSMUST00000211053 2394 ntBASIC16.74■□□□□ 0.27
Traf1P39428 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Traf1P39428 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Traf1P39428 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Traf1P39428 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Traf1P39428 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Traf1P39428 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Traf1P39428 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Traf1P39428 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Traf1P39428 Gm12151-201ENSMUST00000121374 290 ntBASIC16.74■□□□□ 0.27
Traf1P39428 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Traf1P39428 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC16.74■□□□□ 0.27
Traf1P39428 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Traf1P39428 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Traf1P39428 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Traf1P39428 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Traf1P39428 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC16.74■□□□□ 0.27
Traf1P39428 Gm9063-201ENSMUST00000223299 582 ntBASIC16.74■□□□□ 0.27
Traf1P39428 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Traf1P39428 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Traf1P39428 Gm37912-201ENSMUST00000191895 3076 ntBASIC16.74■□□□□ 0.27
Traf1P39428 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Traf1P39428 Gm10605-202ENSMUST00000183019 3198 ntBASIC16.74■□□□□ 0.27
Traf1P39428 Camk2g-217ENSMUST00000226630 1937 ntBASIC16.74■□□□□ 0.27
Traf1P39428 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Traf1P39428 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Traf1P39428 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Traf1P39428 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Traf1P39428 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Traf1P39428 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
Traf1P39428 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Traf1P39428 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Traf1P39428 Gm12428-201ENSMUST00000119844 727 ntBASIC16.73■□□□□ 0.27
Traf1P39428 Gm6222-201ENSMUST00000120787 396 ntBASIC16.73■□□□□ 0.27
Traf1P39428 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC16.73■□□□□ 0.27
Traf1P39428 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC16.73■□□□□ 0.27
Traf1P39428 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Traf1P39428 Gm27437-201ENSMUST00000183429 107 ntBASIC16.73■□□□□ 0.27
Traf1P39428 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC16.73■□□□□ 0.27
Traf1P39428 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Traf1P39428 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Traf1P39428 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Traf1P39428 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Traf1P39428 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Traf1P39428 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC16.73■□□□□ 0.27
Traf1P39428 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Traf1P39428 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC16.73■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms