Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col1a1P11087 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col1a1P11087 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col1a1P11087 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col1a1P11087 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col1a1P11087 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC16.75■□□□□ 0.27
Col1a1P11087 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col1a1P11087 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Col1a1P11087 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Col1a1P11087 Gm44974-201ENSMUST00000206387 1279 ntBASIC16.75■□□□□ 0.27
Col1a1P11087 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Col1a1P11087 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col1a1P11087 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col1a1P11087 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col1a1P11087 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
Col1a1P11087 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col1a1P11087 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Col1a1P11087 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col1a1P11087 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Col1a1P11087 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col1a1P11087 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col1a1P11087 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Col1a1P11087 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col1a1P11087 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col1a1P11087 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Col1a1P11087 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col1a1P11087 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Col1a1P11087 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col1a1P11087 Gm11661-201ENSMUST00000121761 1327 ntBASIC16.74■□□□□ 0.27
Col1a1P11087 Gm13612-201ENSMUST00000119276 390 ntBASIC16.74■□□□□ 0.27
Col1a1P11087 Gm13385-201ENSMUST00000121089 220 ntBASIC16.74■□□□□ 0.27
Col1a1P11087 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC16.74■□□□□ 0.27
Col1a1P11087 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
Col1a1P11087 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col1a1P11087 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col1a1P11087 Gm27772-201ENSMUST00000184900 187 ntBASIC16.74■□□□□ 0.27
Col1a1P11087 Gm5276-201ENSMUST00000196683 1047 ntBASIC16.74■□□□□ 0.27
Col1a1P11087 AC139350.3-201ENSMUST00000226151 420 ntBASIC16.74■□□□□ 0.27
Col1a1P11087 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col1a1P11087 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col1a1P11087 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col1a1P11087 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col1a1P11087 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC16.74■□□□□ 0.27
Col1a1P11087 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Col1a1P11087 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Col1a1P11087 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col1a1P11087 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col1a1P11087 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col1a1P11087 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC16.74■□□□□ 0.27
Col1a1P11087 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Col1a1P11087 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col1a1P11087 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col1a1P11087 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col1a1P11087 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC16.74■□□□□ 0.27
Col1a1P11087 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col1a1P11087 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
Col1a1P11087 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col1a1P11087 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col1a1P11087 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
Col1a1P11087 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC16.73■□□□□ 0.27
Col1a1P11087 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC16.73■□□□□ 0.27
Col1a1P11087 AC102291.3-201ENSMUST00000226566 405 ntBASIC16.73■□□□□ 0.27
Col1a1P11087 AC126253.1-201ENSMUST00000227974 824 ntBASIC16.73■□□□□ 0.27
Col1a1P11087 Gm10012-201ENSMUST00000078252 192 ntBASIC16.73■□□□□ 0.27
Col1a1P11087 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
Col1a1P11087 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Col1a1P11087 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
Col1a1P11087 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Gm23931-201ENSMUST00000103842 109 ntBASIC16.73■□□□□ 0.27
Col1a1P11087 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Col1a1P11087 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC16.73■□□□□ 0.27
Col1a1P11087 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC16.73■□□□□ 0.27
Col1a1P11087 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC16.73■□□□□ 0.27
Col1a1P11087 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Col1a1P11087 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC16.73■□□□□ 0.27
Col1a1P11087 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col1a1P11087 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col1a1P11087 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Col1a1P11087 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Col1a1P11087 Gm21038-201ENSMUST00000222205 1383 ntBASIC16.72■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms