Protein–RNA interactions for Protein: P02831

Hoxa3, Homeobox protein Hox-A3, mousemouse

Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxa3P02831 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
Hoxa3P02831 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Hoxa3P02831 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Hoxa3P02831 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC12.16□□□□□ -0.46
Hoxa3P02831 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Hoxa3P02831 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Gm13015-201ENSMUST00000118674 204 ntBASIC12.16□□□□□ -0.46
Hoxa3P02831 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC12.16□□□□□ -0.46
Hoxa3P02831 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC12.16□□□□□ -0.46
Hoxa3P02831 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC12.16□□□□□ -0.46
Hoxa3P02831 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC12.16□□□□□ -0.46
Hoxa3P02831 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Hoxa3P02831 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC12.16□□□□□ -0.46
Hoxa3P02831 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hoxa3P02831 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Gm42934-201ENSMUST00000196920 1345 ntBASIC12.15□□□□□ -0.46
Hoxa3P02831 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC12.15□□□□□ -0.46
Hoxa3P02831 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC12.15□□□□□ -0.46
Hoxa3P02831 Gm15693-201ENSMUST00000120470 637 ntBASIC12.15□□□□□ -0.46
Hoxa3P02831 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Hoxa3P02831 Gm18737-201ENSMUST00000173594 937 ntBASIC12.15□□□□□ -0.46
Hoxa3P02831 Gm29541-201ENSMUST00000191351 678 ntBASIC12.15□□□□□ -0.46
Hoxa3P02831 Gm38225-201ENSMUST00000194001 393 ntBASIC12.15□□□□□ -0.46
Hoxa3P02831 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC12.15□□□□□ -0.46
Hoxa3P02831 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC12.15□□□□□ -0.46
Hoxa3P02831 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Hoxa3P02831 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Hoxa3P02831 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.47
Hoxa3P02831 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxa3P02831 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxa3P02831 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxa3P02831 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxa3P02831 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxa3P02831 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Hoxa3P02831 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxa3P02831 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxa3P02831 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxa3P02831 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxa3P02831 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC12.14□□□□□ -0.47
Hoxa3P02831 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC12.14□□□□□ -0.47
Hoxa3P02831 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxa3P02831 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxa3P02831 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxa3P02831 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxa3P02831 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
Hoxa3P02831 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxa3P02831 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxa3P02831 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxa3P02831 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Hoxa3P02831 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Hoxa3P02831 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms