Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Chd6A3KFM7 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Chd6A3KFM7 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd6A3KFM7 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd6A3KFM7 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd6A3KFM7 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC11.62□□□□□ -0.55
Chd6A3KFM7 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd6A3KFM7 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC11.62□□□□□ -0.55
Chd6A3KFM7 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd6A3KFM7 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd6A3KFM7 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd6A3KFM7 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd6A3KFM7 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd6A3KFM7 Gm14277-201ENSMUST00000121195 360 ntBASIC11.62□□□□□ -0.55
Chd6A3KFM7 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC11.62□□□□□ -0.55
Chd6A3KFM7 Gm9124-201ENSMUST00000191789 1092 ntBASIC11.62□□□□□ -0.55
Chd6A3KFM7 Gm9113-201ENSMUST00000192510 1018 ntBASIC11.62□□□□□ -0.55
Chd6A3KFM7 Gm9131-201ENSMUST00000193557 1089 ntBASIC11.62□□□□□ -0.55
Chd6A3KFM7 Gm9121-201ENSMUST00000193749 1071 ntBASIC11.62□□□□□ -0.55
Chd6A3KFM7 Gstp-ps-201ENSMUST00000195526 631 ntBASIC11.62□□□□□ -0.55
Chd6A3KFM7 Gm44551-201ENSMUST00000208804 171 ntBASIC11.62□□□□□ -0.55
Chd6A3KFM7 Gm7046-201ENSMUST00000221351 977 ntBASIC11.62□□□□□ -0.55
Chd6A3KFM7 Rps18-ps3-201ENSMUST00000080443 456 ntBASIC11.62□□□□□ -0.55
Chd6A3KFM7 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd6A3KFM7 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd6A3KFM7 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd6A3KFM7 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd6A3KFM7 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd6A3KFM7 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC11.62□□□□□ -0.55
Chd6A3KFM7 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Chd6A3KFM7 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Chd6A3KFM7 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Gm11667-201ENSMUST00000119828 486 ntBASIC11.61□□□□□ -0.55
Chd6A3KFM7 Gm11803-201ENSMUST00000119966 444 ntBASIC11.61□□□□□ -0.55
Chd6A3KFM7 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 E230034D01Rik-201ENSMUST00000214440 1212 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 AC132384.14-201ENSMUST00000219346 1147 ntBASIC11.61□□□□□ -0.55
Chd6A3KFM7 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Ntrk2-205ENSMUST00000224402 2284 ntBASIC11.61□□□□□ -0.55
Chd6A3KFM7 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC11.61□□□□□ -0.55
Chd6A3KFM7 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC11.61□□□□□ -0.55
Chd6A3KFM7 Gm19208-201ENSMUST00000213861 912 ntBASIC11.61□□□□□ -0.55
Chd6A3KFM7 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC11.61□□□□□ -0.55
Chd6A3KFM7 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
Chd6A3KFM7 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC11.6□□□□□ -0.55
Chd6A3KFM7 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Gm5869-201ENSMUST00000200248 1257 ntBASIC11.6□□□□□ -0.55
Chd6A3KFM7 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Gm45760-201ENSMUST00000212190 1782 ntBASIC11.6□□□□□ -0.55
Chd6A3KFM7 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Chd6A3KFM7 AC136986.1-201ENSMUST00000222829 380 ntTSL 2 BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Prob1-201ENSMUST00000097619 3021 ntBASIC11.6□□□□□ -0.55
Chd6A3KFM7 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
Chd6A3KFM7 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC11.59□□□□□ -0.55
Chd6A3KFM7 Gm12715-201ENSMUST00000121430 1128 ntBASIC11.59□□□□□ -0.55
Chd6A3KFM7 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC11.59□□□□□ -0.55
Chd6A3KFM7 Gm15376-201ENSMUST00000122258 783 ntBASIC11.59□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms