Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
Prpf40aQ9R1C7 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 H2af-ps-201ENSMUST00000119066 295 ntBASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Gm25911-201ENSMUST00000157621 56 ntBASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Prpf40aQ9R1C7 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Prpf40aQ9R1C7 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
Prpf40aQ9R1C7 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
Prpf40aQ9R1C7 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Gm13233-201ENSMUST00000118760 1443 ntBASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Gm13244-201ENSMUST00000118855 1446 ntBASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 AC167013.2-201ENSMUST00000228520 2684 ntBASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Trav13-3-201ENSMUST00000117226 336 ntBASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Gm11025-201ENSMUST00000140773 466 ntBASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Gm2756-201ENSMUST00000195851 400 ntBASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Gm43073-201ENSMUST00000198200 1189 ntBASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 AC225888.1-201ENSMUST00000227184 728 ntBASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Prpf40aQ9R1C7 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Prpf40aQ9R1C7 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC15.94■□□□□ 0.14
Prpf40aQ9R1C7 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Prpf40aQ9R1C7 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Prpf40aQ9R1C7 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
Prpf40aQ9R1C7 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Prpf40aQ9R1C7 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Prpf40aQ9R1C7 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Prpf40aQ9R1C7 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Prpf40aQ9R1C7 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Prpf40aQ9R1C7 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Prpf40aQ9R1C7 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Prpf40aQ9R1C7 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Prpf40aQ9R1C7 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC15.94■□□□□ 0.14
Prpf40aQ9R1C7 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC15.94■□□□□ 0.14
Prpf40aQ9R1C7 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC15.94■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 54.7 ms