Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Gm11453-201ENSMUST00000117318 1007 ntBASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Gm45779-201ENSMUST00000212189 4064 ntBASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Gm38197-201ENSMUST00000192320 2122 ntBASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Lima1Q9ERG0 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 AC164629.2-201ENSMUST00000217916 270 ntBASIC14.34□□□□□ -0.11
Lima1Q9ERG0 AC151836.1-202ENSMUST00000226259 753 ntBASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Lima1Q9ERG0 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Lima1Q9ERG0 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC14.33□□□□□ -0.11
Lima1Q9ERG0 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC14.33□□□□□ -0.11
Lima1Q9ERG0 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Lima1Q9ERG0 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Lima1Q9ERG0 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Lima1Q9ERG0 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC14.33□□□□□ -0.12
Lima1Q9ERG0 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Lima1Q9ERG0 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lima1Q9ERG0 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC14.33□□□□□ -0.12
Lima1Q9ERG0 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC14.33□□□□□ -0.12
Lima1Q9ERG0 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lima1Q9ERG0 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Lima1Q9ERG0 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC14.33□□□□□ -0.12
Lima1Q9ERG0 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC14.33□□□□□ -0.12
Lima1Q9ERG0 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
Lima1Q9ERG0 AC147366.1-201ENSMUST00000227671 852 ntBASIC14.33□□□□□ -0.12
Lima1Q9ERG0 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lima1Q9ERG0 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lima1Q9ERG0 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lima1Q9ERG0 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lima1Q9ERG0 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lima1Q9ERG0 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lima1Q9ERG0 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Lima1Q9ERG0 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC14.33□□□□□ -0.12
Lima1Q9ERG0 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC14.33□□□□□ -0.12
Lima1Q9ERG0 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Lima1Q9ERG0 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms