Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Scn4aQ9ER60 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Scn4aQ9ER60 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Scn4aQ9ER60 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Scn4aQ9ER60 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Scn4aQ9ER60 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Scn4aQ9ER60 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC19.39■□□□□ 0.69
Scn4aQ9ER60 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Scn4aQ9ER60 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
Scn4aQ9ER60 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Scn4aQ9ER60 Gm30285-201ENSMUST00000214614 422 ntBASIC19.39■□□□□ 0.69
Scn4aQ9ER60 Krtap5-1-201ENSMUST00000084413 588 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Scn4aQ9ER60 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Scn4aQ9ER60 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Scn4aQ9ER60 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Scn4aQ9ER60 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Ptges3l-203ENSMUST00000107252 853 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Gm16740-201ENSMUST00000181819 956 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Gm38317-201ENSMUST00000195564 343 ntBASIC19.38■□□□□ 0.69
Scn4aQ9ER60 AC141438.2-201ENSMUST00000215068 271 ntBASIC19.38■□□□□ 0.69
Scn4aQ9ER60 AC135114.1-201ENSMUST00000228682 270 ntBASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Scn4aQ9ER60 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Snhg8-201ENSMUST00000196466 448 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Gm42550-201ENSMUST00000201553 960 ntBASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Gm18212-201ENSMUST00000211678 889 ntBASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Lat2-205ENSMUST00000200998 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Gm13570-201ENSMUST00000140763 309 ntBASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Gm18615-201ENSMUST00000222919 1031 ntBASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scn4aQ9ER60 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Scn4aQ9ER60 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn4aQ9ER60 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn4aQ9ER60 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn4aQ9ER60 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Scn4aQ9ER60 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn4aQ9ER60 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC19.36■□□□□ 0.69
Scn4aQ9ER60 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Scn4aQ9ER60 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Scn4aQ9ER60 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC19.36■□□□□ 0.69
Scn4aQ9ER60 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC19.36■□□□□ 0.69
Scn4aQ9ER60 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC19.36■□□□□ 0.69
Scn4aQ9ER60 Gm20426-201ENSMUST00000173657 440 ntBASIC19.36■□□□□ 0.69
Scn4aQ9ER60 Mospd4-201ENSMUST00000180618 576 ntBASIC19.36■□□□□ 0.69
Scn4aQ9ER60 Gm8285-201ENSMUST00000208293 759 ntBASIC19.36■□□□□ 0.69
Scn4aQ9ER60 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Scn4aQ9ER60 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn4aQ9ER60 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn4aQ9ER60 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Scn4aQ9ER60 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn4aQ9ER60 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scn4aQ9ER60 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Mir6958-201ENSMUST00000184207 73 ntBASIC19.35■□□□□ 0.69
Scn4aQ9ER60 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC19.35■□□□□ 0.69
Scn4aQ9ER60 Gm45219-201ENSMUST00000205602 465 ntBASIC19.35■□□□□ 0.69
Scn4aQ9ER60 AC102291.3-201ENSMUST00000226566 405 ntBASIC19.35■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms