Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Gm13410-201ENSMUST00000117058 1415 ntBASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ushbp1Q8R370 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Gm44981-201ENSMUST00000205549 1943 ntBASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Gm6018-201ENSMUST00000216090 1306 ntBASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Ushbp1Q8R370 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ushbp1Q8R370 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Gm27622-201ENSMUST00000183779 60 ntBASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Gm14026-201ENSMUST00000120625 1789 ntBASIC16.27■□□□□ 0.2
Ushbp1Q8R370 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Ap5m1-205ENSMUST00000227431 3757 ntBASIC16.27■□□□□ 0.2
Ushbp1Q8R370 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Ushbp1Q8R370 AC164565.1-201ENSMUST00000217520 1484 ntBASIC16.27■□□□□ 0.19
Ushbp1Q8R370 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ushbp1Q8R370 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ushbp1Q8R370 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC16.27■□□□□ 0.19
Ushbp1Q8R370 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
Ushbp1Q8R370 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Nudt18-203ENSMUST00000228768 1578 ntBASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Gm12428-201ENSMUST00000119844 727 ntBASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Gm4691-201ENSMUST00000182339 1000 ntBASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Gm6944-201ENSMUST00000182449 1006 ntBASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Gm2451-201ENSMUST00000199447 999 ntBASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Gm10290-201ENSMUST00000200451 999 ntBASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ushbp1Q8R370 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC16.26■□□□□ 0.19
Ushbp1Q8R370 AC148324.1-201ENSMUST00000219034 4240 ntBASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Ushbp1Q8R370 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 AC154767.3-201ENSMUST00000225150 1342 ntBASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Olfr286-202ENSMUST00000205305 969 ntBASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Ushbp1Q8R370 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 51.9 ms