Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Trim47Q8C0E3 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trim47Q8C0E3 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
Trim47Q8C0E3 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC16.08■□□□□ 0.17
Trim47Q8C0E3 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Trim47Q8C0E3 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trim47Q8C0E3 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 Gm9719-201ENSMUST00000162765 543 ntBASIC16.08■□□□□ 0.16
Trim47Q8C0E3 Gm27533-201ENSMUST00000183800 152 ntBASIC16.08■□□□□ 0.16
Trim47Q8C0E3 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 AC149588.3-201ENSMUST00000227515 150 ntBASIC16.08■□□□□ 0.16
Trim47Q8C0E3 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Trim47Q8C0E3 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Gm27631-201ENSMUST00000184163 466 ntBASIC16.07■□□□□ 0.16
Trim47Q8C0E3 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 AC159621.2-201ENSMUST00000223519 1326 ntBASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trim47Q8C0E3 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim47Q8C0E3 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim47Q8C0E3 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
Trim47Q8C0E3 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
Trim47Q8C0E3 Gm43509-201ENSMUST00000196551 2594 ntBASIC16.06■□□□□ 0.16
Trim47Q8C0E3 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim47Q8C0E3 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Trim47Q8C0E3 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Trim47Q8C0E3 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC16.06■□□□□ 0.16
Trim47Q8C0E3 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim47Q8C0E3 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trim47Q8C0E3 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC16.06■□□□□ 0.16
Trim47Q8C0E3 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trim47Q8C0E3 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
Trim47Q8C0E3 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trim47Q8C0E3 Shd-206ENSMUST00000225145 998 ntBASIC16.06■□□□□ 0.16
Trim47Q8C0E3 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
Trim47Q8C0E3 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim47Q8C0E3 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim47Q8C0E3 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim47Q8C0E3 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim47Q8C0E3 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trim47Q8C0E3 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Gm4081-201ENSMUST00000195287 1838 ntBASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms