Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp40Q8BWR4 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp40Q8BWR4 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Usp40Q8BWR4 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Usp40Q8BWR4 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
Usp40Q8BWR4 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp40Q8BWR4 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp40Q8BWR4 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp40Q8BWR4 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC19.83■□□□□ 0.76
Usp40Q8BWR4 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp40Q8BWR4 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Sybu-209ENSMUST00000228639 4113 ntBASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp40Q8BWR4 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Gm12138-201ENSMUST00000122180 951 ntBASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC19.82■□□□□ 0.76
Usp40Q8BWR4 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC19.82■□□□□ 0.76
Usp40Q8BWR4 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Gm15163-201ENSMUST00000120749 1302 ntBASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Gm37917-201ENSMUST00000194711 392 ntBASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Gm18018-201ENSMUST00000198273 408 ntBASIC19.81■□□□□ 0.76
Usp40Q8BWR4 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Usp40Q8BWR4 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp40Q8BWR4 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp40Q8BWR4 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp40Q8BWR4 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Usp40Q8BWR4 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp40Q8BWR4 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Usp40Q8BWR4 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC19.8■□□□□ 0.76
Usp40Q8BWR4 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Usp40Q8BWR4 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Usp40Q8BWR4 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC19.8■□□□□ 0.76
Usp40Q8BWR4 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
Usp40Q8BWR4 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC19.8■□□□□ 0.76
Usp40Q8BWR4 Gm8515-201ENSMUST00000194852 576 ntBASIC19.8■□□□□ 0.76
Usp40Q8BWR4 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp40Q8BWR4 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp40Q8BWR4 Gm15823-201ENSMUST00000064305 670 ntBASIC19.8■□□□□ 0.76
Usp40Q8BWR4 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Usp40Q8BWR4 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp40Q8BWR4 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp40Q8BWR4 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp40Q8BWR4 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Usp40Q8BWR4 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp40Q8BWR4 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp40Q8BWR4 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Usp40Q8BWR4 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp40Q8BWR4 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp40Q8BWR4 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Usp40Q8BWR4 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Usp40Q8BWR4 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC19.79■□□□□ 0.76
Usp40Q8BWR4 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC19.79■□□□□ 0.76
Usp40Q8BWR4 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC19.79■□□□□ 0.76
Usp40Q8BWR4 Gm9908-201ENSMUST00000211534 448 ntBASIC19.79■□□□□ 0.76
Usp40Q8BWR4 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC19.79■□□□□ 0.76
Usp40Q8BWR4 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp40Q8BWR4 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms