Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Ccdc40Q8BI79 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Gm14140-201ENSMUST00000119999 995 ntBASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Gm2272-201ENSMUST00000194903 582 ntBASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 AC154222.1-201ENSMUST00000223882 475 ntBASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Gm12500-202ENSMUST00000186471 2428 ntBASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Ccdc40Q8BI79 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Ccdc40Q8BI79 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Gm12620-201ENSMUST00000119791 1986 ntBASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Gm12612-201ENSMUST00000140182 1986 ntBASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Psmb5-202ENSMUST00000227257 622 ntBASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Slc34a1-201ENSMUST00000057167 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Ccdc40Q8BI79 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms