Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Gm26308-201ENSMUST00000157768 69 ntBASIC14.32□□□□□ -0.12
Ubp1Q811S7 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC14.32□□□□□ -0.12
Ubp1Q811S7 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC14.32□□□□□ -0.12
Ubp1Q811S7 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC14.32□□□□□ -0.12
Ubp1Q811S7 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Ubp1Q811S7 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Gm5479-201ENSMUST00000160578 435 ntBASIC14.31□□□□□ -0.12
Ubp1Q811S7 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Mir6990-201ENSMUST00000183724 91 ntBASIC14.31□□□□□ -0.12
Ubp1Q811S7 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
Ubp1Q811S7 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ubp1Q811S7 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Gm43598-201ENSMUST00000202482 2479 ntBASIC14.3□□□□□ -0.12
Ubp1Q811S7 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC14.3□□□□□ -0.12
Ubp1Q811S7 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Ubp1Q811S7 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Ubp1Q811S7 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC14.3□□□□□ -0.12
Ubp1Q811S7 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ubp1Q811S7 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Ubp1Q811S7 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ubp1Q811S7 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms