Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb4Q6P8W9 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb4Q6P8W9 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb4Q6P8W9 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb4Q6P8W9 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb4Q6P8W9 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb4Q6P8W9 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb4Q6P8W9 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb4Q6P8W9 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb4Q6P8W9 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb4Q6P8W9 Gm5357-201ENSMUST00000212720 1924 ntBASIC15.23■□□□□ 0.03
Hmgb4Q6P8W9 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb4Q6P8W9 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb4Q6P8W9 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb4Q6P8W9 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb4Q6P8W9 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Hmgb4Q6P8W9 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Hmgb4Q6P8W9 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Hmgb4Q6P8W9 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Gm15693-201ENSMUST00000120470 637 ntBASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Ighv8-7-201ENSMUST00000194349 297 ntBASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Gm6888-201ENSMUST00000221983 706 ntBASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Rbfox2-208ENSMUST00000227930 1218 ntBASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Hmgb4Q6P8W9 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb4Q6P8W9 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb4Q6P8W9 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC15.21■□□□□ 0.03
Hmgb4Q6P8W9 Gm45760-201ENSMUST00000212190 1782 ntBASIC15.21■□□□□ 0.03
Hmgb4Q6P8W9 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb4Q6P8W9 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb4Q6P8W9 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC15.21■□□□□ 0.03
Hmgb4Q6P8W9 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC15.21■□□□□ 0.03
Hmgb4Q6P8W9 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb4Q6P8W9 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
Hmgb4Q6P8W9 Gm8242-201ENSMUST00000193029 1420 ntBASIC15.21■□□□□ 0.03
Hmgb4Q6P8W9 Gm13015-201ENSMUST00000118674 204 ntBASIC15.21■□□□□ 0.03
Hmgb4Q6P8W9 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC15.21■□□□□ 0.03
Hmgb4Q6P8W9 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb4Q6P8W9 Gm18049-201ENSMUST00000208909 581 ntBASIC15.21■□□□□ 0.03
Hmgb4Q6P8W9 AC125206.2-201ENSMUST00000217454 574 ntBASIC15.21■□□□□ 0.03
Hmgb4Q6P8W9 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Hmgb4Q6P8W9 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Hmgb4Q6P8W9 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
Hmgb4Q6P8W9 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Hmgb4Q6P8W9 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Hmgb4Q6P8W9 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
Hmgb4Q6P8W9 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Hmgb4Q6P8W9 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Camk2g-217ENSMUST00000226630 1937 ntBASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC15.2■□□□□ 0.02
Hmgb4Q6P8W9 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms