Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Trim28Q62318 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim28Q62318 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trim28Q62318 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim28Q62318 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim28Q62318 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trim28Q62318 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Trim28Q62318 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC18.73■□□□□ 0.59
Trim28Q62318 Gm15240-201ENSMUST00000118156 720 ntBASIC18.73■□□□□ 0.59
Trim28Q62318 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trim28Q62318 Gm37714-201ENSMUST00000194742 342 ntBASIC18.73■□□□□ 0.59
Trim28Q62318 AC165157.4-201ENSMUST00000220587 139 ntBASIC18.73■□□□□ 0.59
Trim28Q62318 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim28Q62318 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Trim28Q62318 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Trim28Q62318 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Trim28Q62318 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Trim28Q62318 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Trim28Q62318 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Trim28Q62318 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim28Q62318 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Trim28Q62318 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Trim28Q62318 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim28Q62318 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim28Q62318 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim28Q62318 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC18.72■□□□□ 0.59
Trim28Q62318 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim28Q62318 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim28Q62318 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Trim28Q62318 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim28Q62318 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trim28Q62318 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim28Q62318 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Trim28Q62318 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC18.72■□□□□ 0.59
Trim28Q62318 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Trim28Q62318 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC18.72■□□□□ 0.59
Trim28Q62318 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC18.72■□□□□ 0.59
Trim28Q62318 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim28Q62318 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim28Q62318 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim28Q62318 Gm6180-201ENSMUST00000065243 498 ntBASIC18.72■□□□□ 0.59
Trim28Q62318 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Trim28Q62318 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC18.72■□□□□ 0.59
Trim28Q62318 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim28Q62318 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
Trim28Q62318 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trim28Q62318 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim28Q62318 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Trim28Q62318 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim28Q62318 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim28Q62318 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Trim28Q62318 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim28Q62318 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim28Q62318 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trim28Q62318 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim28Q62318 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Trim28Q62318 AC121801.1-201ENSMUST00000225363 1899 ntBASIC18.71■□□□□ 0.59
Trim28Q62318 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim28Q62318 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Trim28Q62318 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim28Q62318 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Trim28Q62318 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim28Q62318 Gm11424-201ENSMUST00000121929 829 ntBASIC18.71■□□□□ 0.59
Trim28Q62318 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC18.71■□□□□ 0.59
Trim28Q62318 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim28Q62318 Gm4804-201ENSMUST00000182234 999 ntBASIC18.71■□□□□ 0.59
Trim28Q62318 Gm9794-201ENSMUST00000202370 423 ntBASIC18.71■□□□□ 0.59
Trim28Q62318 AC154239.3-201ENSMUST00000226933 674 ntBASIC18.71■□□□□ 0.59
Trim28Q62318 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim28Q62318 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim28Q62318 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Trim28Q62318 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Trim28Q62318 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim28Q62318 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Trim28Q62318 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
Trim28Q62318 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
Trim28Q62318 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
Trim28Q62318 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
Trim28Q62318 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trim28Q62318 AC115735.4-201ENSMUST00000227460 1944 ntBASIC18.7■□□□□ 0.58
Trim28Q62318 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim28Q62318 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Trim28Q62318 Gm9856-201ENSMUST00000217077 2578 ntBASIC18.7■□□□□ 0.58
Trim28Q62318 Gm6912-201ENSMUST00000117218 544 ntBASIC18.7■□□□□ 0.58
Trim28Q62318 Ldha-ps-201ENSMUST00000119390 995 ntBASIC18.7■□□□□ 0.58
Trim28Q62318 Gm12490-201ENSMUST00000120255 560 ntBASIC18.7■□□□□ 0.58
Trim28Q62318 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Trim28Q62318 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC18.7■□□□□ 0.58
Trim28Q62318 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
Trim28Q62318 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Trim28Q62318 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC18.7■□□□□ 0.58
Trim28Q62318 AC162938.1-201ENSMUST00000213140 2323 ntBASIC18.7■□□□□ 0.58
Trim28Q62318 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim28Q62318 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim28Q62318 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim28Q62318 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim28Q62318 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Trim28Q62318 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim28Q62318 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Trim28Q62318 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 53.7 ms