Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Upf3bQ3ULL6 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Upf3bQ3ULL6 Fbxl12-205ENSMUST00000140702 1555 ntBASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Gm26308-201ENSMUST00000157768 69 ntBASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Gm37230-201ENSMUST00000194491 818 ntBASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Gm43125-201ENSMUST00000201724 730 ntBASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Gm38042-201ENSMUST00000191614 5208 ntBASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC15.53■□□□□ 0.08
Upf3bQ3ULL6 CT025626.1-201ENSMUST00000223735 1455 ntBASIC15.52■□□□□ 0.08
Upf3bQ3ULL6 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Upf3bQ3ULL6 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Upf3bQ3ULL6 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC15.52■□□□□ 0.08
Upf3bQ3ULL6 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Upf3bQ3ULL6 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Upf3bQ3ULL6 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Upf3bQ3ULL6 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Upf3bQ3ULL6 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Upf3bQ3ULL6 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Upf3bQ3ULL6 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Upf3bQ3ULL6 Gm12134-201ENSMUST00000122109 520 ntBASIC15.52■□□□□ 0.08
Upf3bQ3ULL6 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Upf3bQ3ULL6 AC131710.1-201ENSMUST00000228336 990 ntBASIC15.52■□□□□ 0.08
Upf3bQ3ULL6 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Upf3bQ3ULL6 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Upf3bQ3ULL6 Gm6756-201ENSMUST00000180647 1620 ntBASIC15.52■□□□□ 0.08
Upf3bQ3ULL6 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Upf3bQ3ULL6 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Upf3bQ3ULL6 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Upf3bQ3ULL6 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Upf3bQ3ULL6 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Upf3bQ3ULL6 Gm43509-201ENSMUST00000196551 2594 ntBASIC15.52■□□□□ 0.07
Upf3bQ3ULL6 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Upf3bQ3ULL6 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Upf3bQ3ULL6 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Upf3bQ3ULL6 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 56.4 ms