Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Tcf21-202ENSMUST00000218002 1788 ntBASIC17.09■□□□□ 0.33
Limch1Q3UH68 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Limch1Q3UH68 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Limch1Q3UH68 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Limch1Q3UH68 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Limch1Q3UH68 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Limch1Q3UH68 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Limch1Q3UH68 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Limch1Q3UH68 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Limch1Q3UH68 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Limch1Q3UH68 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Limch1Q3UH68 Gm13410-201ENSMUST00000117058 1415 ntBASIC17.08■□□□□ 0.32
Limch1Q3UH68 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Limch1Q3UH68 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Limch1Q3UH68 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Limch1Q3UH68 Gm9385-201ENSMUST00000117563 472 ntBASIC17.08■□□□□ 0.32
Limch1Q3UH68 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC17.08■□□□□ 0.32
Limch1Q3UH68 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC17.08■□□□□ 0.32
Limch1Q3UH68 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC17.08■□□□□ 0.32
Limch1Q3UH68 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC17.08■□□□□ 0.32
Limch1Q3UH68 Gm43125-201ENSMUST00000201724 730 ntBASIC17.08■□□□□ 0.32
Limch1Q3UH68 Gm20949-201ENSMUST00000206478 952 ntBASIC17.08■□□□□ 0.32
Limch1Q3UH68 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC17.08■□□□□ 0.32
Limch1Q3UH68 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC17.08■□□□□ 0.32
Limch1Q3UH68 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Limch1Q3UH68 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
Limch1Q3UH68 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Limch1Q3UH68 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Limch1Q3UH68 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Limch1Q3UH68 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Limch1Q3UH68 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Limch1Q3UH68 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Limch1Q3UH68 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Limch1Q3UH68 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Gm27321-201ENSMUST00000185021 205 ntBASIC17.07■□□□□ 0.32
Limch1Q3UH68 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Limch1Q3UH68 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Gm44981-201ENSMUST00000205549 1943 ntBASIC17.07■□□□□ 0.32
Limch1Q3UH68 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC17.07■□□□□ 0.32
Limch1Q3UH68 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Limch1Q3UH68 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Gm14026-201ENSMUST00000120625 1789 ntBASIC17.06■□□□□ 0.32
Limch1Q3UH68 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Limch1Q3UH68 AC126250.1-201ENSMUST00000228343 1768 ntBASIC17.06■□□□□ 0.32
Limch1Q3UH68 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Limch1Q3UH68 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Gm43205-201ENSMUST00000198622 1968 ntBASIC17.06■□□□□ 0.32
Limch1Q3UH68 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Limch1Q3UH68 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Limch1Q3UH68 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC17.05■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms