Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Gm44981-201ENSMUST00000205549 1943 ntBASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC14.08□□□□□ -0.16
Usp39Q3TIX9 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Gm10576-201ENSMUST00000191927 825 ntBASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC14.08□□□□□ -0.16
Usp39Q3TIX9 AC084391.1-201ENSMUST00000200651 141 ntBASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Usp39Q3TIX9 AC122901.1-201ENSMUST00000214203 1790 ntBASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Usp39Q3TIX9 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Mir3113-201ENSMUST00000175478 76 ntBASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 AC174742.1-201ENSMUST00000218272 304 ntBASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC14.07□□□□□ -0.16
Usp39Q3TIX9 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 AC151286.1-201ENSMUST00000198489 145 ntBASIC14.06□□□□□ -0.16
Usp39Q3TIX9 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Usp39Q3TIX9 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Usp39Q3TIX9 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms