Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 AC131330.1-201ENSMUST00000227814 1015 ntBASIC21.86■■□□□ 1.09
Col17a1Q07563 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Col17a1Q07563 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Col17a1Q07563 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Col17a1Q07563 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Col17a1Q07563 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
Col17a1Q07563 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC21.86■■□□□ 1.09
Col17a1Q07563 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Col17a1Q07563 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
Col17a1Q07563 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC21.85■■□□□ 1.09
Col17a1Q07563 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col17a1Q07563 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC21.85■■□□□ 1.09
Col17a1Q07563 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
Col17a1Q07563 Gm11400-201ENSMUST00000120853 1214 ntBASIC21.85■■□□□ 1.09
Col17a1Q07563 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col17a1Q07563 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC21.85■■□□□ 1.09
Col17a1Q07563 AC099645.1-201ENSMUST00000226476 1105 ntBASIC21.85■■□□□ 1.09
Col17a1Q07563 Rps18-ps3-201ENSMUST00000080443 456 ntBASIC21.85■■□□□ 1.09
Col17a1Q07563 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col17a1Q07563 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col17a1Q07563 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC21.85■■□□□ 1.09
Col17a1Q07563 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col17a1Q07563 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col17a1Q07563 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Col17a1Q07563 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Col17a1Q07563 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC21.84■■□□□ 1.09
Col17a1Q07563 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
Col17a1Q07563 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC21.84■■□□□ 1.09
Col17a1Q07563 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col17a1Q07563 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Col17a1Q07563 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC21.84■■□□□ 1.09
Col17a1Q07563 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Col17a1Q07563 AA914427-201ENSMUST00000193194 1166 ntBASIC21.84■■□□□ 1.09
Col17a1Q07563 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Col17a1Q07563 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col17a1Q07563 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col17a1Q07563 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col17a1Q07563 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col17a1Q07563 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col17a1Q07563 Gm8242-201ENSMUST00000193029 1420 ntBASIC21.84■■□□□ 1.09
Col17a1Q07563 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC21.84■■□□□ 1.09
Col17a1Q07563 AC161252.3-201ENSMUST00000225465 1549 ntBASIC21.84■■□□□ 1.09
Col17a1Q07563 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Col17a1Q07563 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col17a1Q07563 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC21.84■■□□□ 1.09
Col17a1Q07563 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col17a1Q07563 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Col17a1Q07563 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Col17a1Q07563 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
Col17a1Q07563 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC21.83■■□□□ 1.09
Col17a1Q07563 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC21.83■■□□□ 1.09
Col17a1Q07563 Gm14730-201ENSMUST00000122378 1045 ntBASIC21.83■■□□□ 1.09
Col17a1Q07563 Gm24420-201ENSMUST00000176676 59 ntBASIC21.83■■□□□ 1.09
Col17a1Q07563 Gm7498-201ENSMUST00000203282 1084 ntBASIC21.83■■□□□ 1.09
Col17a1Q07563 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Col17a1Q07563 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Col17a1Q07563 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Col17a1Q07563 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Col17a1Q07563 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Col17a1Q07563 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC21.83■■□□□ 1.08
Col17a1Q07563 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
Col17a1Q07563 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
Col17a1Q07563 Gm30285-201ENSMUST00000214614 422 ntBASIC21.83■■□□□ 1.08
Col17a1Q07563 Itm2b-204ENSMUST00000228637 783 ntBASIC21.83■■□□□ 1.08
Col17a1Q07563 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Col17a1Q07563 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
Col17a1Q07563 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col17a1Q07563 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col17a1Q07563 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC21.82■■□□□ 1.08
Col17a1Q07563 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Col17a1Q07563 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col17a1Q07563 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col17a1Q07563 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col17a1Q07563 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col17a1Q07563 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC21.82■■□□□ 1.08
Col17a1Q07563 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col17a1Q07563 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC21.82■■□□□ 1.08
Col17a1Q07563 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Col17a1Q07563 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
Col17a1Q07563 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC21.82■■□□□ 1.08
Col17a1Q07563 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
Col17a1Q07563 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col17a1Q07563 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Col17a1Q07563 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
Col17a1Q07563 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
Col17a1Q07563 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC21.81■■□□□ 1.08
Col17a1Q07563 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Col17a1Q07563 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col17a1Q07563 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col17a1Q07563 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
Col17a1Q07563 Nras-208ENSMUST00000200069 831 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
Col17a1Q07563 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC21.81■■□□□ 1.08
Col17a1Q07563 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Col17a1Q07563 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC21.81■■□□□ 1.08
Col17a1Q07563 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col17a1Q07563 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col17a1Q07563 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Col17a1Q07563 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC21.81■■□□□ 1.08
Col17a1Q07563 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC21.81■■□□□ 1.08
Col17a1Q07563 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 70.8 ms