Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC13.26□□□□□ -0.29
Cdh11P55288 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC13.26□□□□□ -0.29
Cdh11P55288 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
Cdh11P55288 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Cdh11P55288 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC13.25□□□□□ -0.29
Cdh11P55288 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Cdh11P55288 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Cdh11P55288 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
Cdh11P55288 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC13.25□□□□□ -0.29
Cdh11P55288 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC13.25□□□□□ -0.29
Cdh11P55288 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
Cdh11P55288 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC13.25□□□□□ -0.29
Cdh11P55288 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Gm4899-201ENSMUST00000178708 719 ntBASIC13.25□□□□□ -0.29
Cdh11P55288 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC13.25□□□□□ -0.29
Cdh11P55288 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Cdh11P55288 Gm21009-201ENSMUST00000197169 1669 ntBASIC13.24□□□□□ -0.29
Cdh11P55288 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC13.24□□□□□ -0.29
Cdh11P55288 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC13.24□□□□□ -0.29
Cdh11P55288 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Cdh11P55288 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC13.24□□□□□ -0.29
Cdh11P55288 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC13.24□□□□□ -0.29
Cdh11P55288 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
Cdh11P55288 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC13.24□□□□□ -0.29
Cdh11P55288 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC13.24□□□□□ -0.29
Cdh11P55288 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC13.24□□□□□ -0.29
Cdh11P55288 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC13.24□□□□□ -0.29
Cdh11P55288 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC13.24□□□□□ -0.29
Cdh11P55288 Mir8117-201ENSMUST00000184773 107 ntBASIC13.24□□□□□ -0.29
Cdh11P55288 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 CT009510.1-201ENSMUST00000227972 270 ntBASIC13.24□□□□□ -0.29
Cdh11P55288 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC13.24□□□□□ -0.29
Cdh11P55288 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC13.24□□□□□ -0.29
Cdh11P55288 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC13.24□□□□□ -0.29
Cdh11P55288 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Cdh11P55288 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
Cdh11P55288 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
Cdh11P55288 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdh11P55288 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
Cdh11P55288 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Cdh11P55288 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms