Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
Cux1P53564 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Cux1P53564 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
Cux1P53564 Gm11803-201ENSMUST00000119966 444 ntBASIC21.98■■□□□ 1.11
Cux1P53564 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
Cux1P53564 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Cux1P53564 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Cux1P53564 Gm37015-201ENSMUST00000192763 1521 ntBASIC21.98■■□□□ 1.11
Cux1P53564 AC114543.1-201ENSMUST00000226451 1558 ntBASIC21.98■■□□□ 1.11
Cux1P53564 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
Cux1P53564 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
Cux1P53564 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cux1P53564 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cux1P53564 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC21.97■■□□□ 1.11
Cux1P53564 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cux1P53564 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cux1P53564 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cux1P53564 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cux1P53564 Gm12742-201ENSMUST00000117326 410 ntBASIC21.97■■□□□ 1.11
Cux1P53564 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Cux1P53564 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Cux1P53564 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
Cux1P53564 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC21.97■■□□□ 1.11
Cux1P53564 Gm13050-201ENSMUST00000122149 1345 ntBASIC21.97■■□□□ 1.11
Cux1P53564 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Cux1P53564 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cux1P53564 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cux1P53564 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Cux1P53564 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Cux1P53564 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cux1P53564 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Cux1P53564 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cux1P53564 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC21.97■■□□□ 1.11
Cux1P53564 AC115735.4-201ENSMUST00000227460 1944 ntBASIC21.97■■□□□ 1.11
Cux1P53564 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cux1P53564 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cux1P53564 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC21.97■■□□□ 1.11
Cux1P53564 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
Cux1P53564 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cux1P53564 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Cux1P53564 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC21.96■■□□□ 1.11
Cux1P53564 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Cux1P53564 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC21.96■■□□□ 1.11
Cux1P53564 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC21.96■■□□□ 1.11
Cux1P53564 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
Cux1P53564 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC21.96■■□□□ 1.11
Cux1P53564 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC21.96■■□□□ 1.11
Cux1P53564 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC21.96■■□□□ 1.11
Cux1P53564 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
Cux1P53564 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC21.96■■□□□ 1.11
Cux1P53564 AC140451.2-201ENSMUST00000228030 664 ntBASIC21.96■■□□□ 1.11
Cux1P53564 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Cux1P53564 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
Cux1P53564 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Cux1P53564 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Cux1P53564 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Cux1P53564 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
Cux1P53564 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
Cux1P53564 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Cux1P53564 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Cux1P53564 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Cux1P53564 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
Cux1P53564 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Cux1P53564 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
Cux1P53564 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
Cux1P53564 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Cux1P53564 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
Cux1P53564 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Cux1P53564 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC21.96■■□□□ 1.11
Cux1P53564 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC21.96■■□□□ 1.11
Cux1P53564 Gm13612-201ENSMUST00000119276 390 ntBASIC21.96■■□□□ 1.11
Cux1P53564 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC21.96■■□□□ 1.11
Cux1P53564 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Cux1P53564 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Cux1P53564 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Cux1P53564 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
Cux1P53564 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
Cux1P53564 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Cux1P53564 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Cux1P53564 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC21.95■■□□□ 1.1
Cux1P53564 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC21.95■■□□□ 1.1
Cux1P53564 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Cux1P53564 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
Cux1P53564 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Cux1P53564 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Cux1P53564 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Cux1P53564 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Cux1P53564 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Cux1P53564 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
Cux1P53564 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC21.95■■□□□ 1.1
Cux1P53564 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Cux1P53564 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Cux1P53564 Gm12485-201ENSMUST00000119641 291 ntBASIC21.95■■□□□ 1.1
Cux1P53564 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Cux1P53564 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC21.95■■□□□ 1.1
Cux1P53564 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Cux1P53564 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
Cux1P53564 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Cux1P53564 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Cux1P53564 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms