Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Shmt1P50431 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Shmt1P50431 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Shmt1P50431 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Shmt1P50431 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Shmt1P50431 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Shmt1P50431 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC15.34■□□□□ 0.05
Shmt1P50431 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Shmt1P50431 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Shmt1P50431 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Shmt1P50431 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Shmt1P50431 Gm4081-201ENSMUST00000195287 1838 ntBASIC15.34■□□□□ 0.05
Shmt1P50431 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Shmt1P50431 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Shmt1P50431 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Shmt1P50431 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Shmt1P50431 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Shmt1P50431 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Shmt1P50431 Gm8410-201ENSMUST00000117225 605 ntBASIC15.34■□□□□ 0.05
Shmt1P50431 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
Shmt1P50431 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Shmt1P50431 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Shmt1P50431 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
Shmt1P50431 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Shmt1P50431 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC15.34■□□□□ 0.05
Shmt1P50431 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Shmt1P50431 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
Shmt1P50431 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Shmt1P50431 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC15.34■□□□□ 0.05
Shmt1P50431 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
Shmt1P50431 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Shmt1P50431 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Shmt1P50431 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
Shmt1P50431 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Shmt1P50431 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Shmt1P50431 Gm5566-201ENSMUST00000116118 459 ntBASIC15.33■□□□□ 0.04
Shmt1P50431 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC15.33■□□□□ 0.04
Shmt1P50431 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC15.33■□□□□ 0.04
Shmt1P50431 Gm27622-201ENSMUST00000183779 60 ntBASIC15.33■□□□□ 0.04
Shmt1P50431 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Shmt1P50431 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC15.33■□□□□ 0.04
Shmt1P50431 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Shmt1P50431 AC126408.1-201ENSMUST00000225184 523 ntBASIC15.33■□□□□ 0.04
Shmt1P50431 AC149588.3-201ENSMUST00000227515 150 ntBASIC15.33■□□□□ 0.04
Shmt1P50431 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Shmt1P50431 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Shmt1P50431 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Shmt1P50431 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Shmt1P50431 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Shmt1P50431 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Shmt1P50431 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Shmt1P50431 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Shmt1P50431 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Shmt1P50431 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Shmt1P50431 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Shmt1P50431 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC15.33■□□□□ 0.04
Shmt1P50431 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Shmt1P50431 Gm37736-201ENSMUST00000193564 2802 ntBASIC15.32■□□□□ 0.04
Shmt1P50431 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Shmt1P50431 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC15.32■□□□□ 0.04
Shmt1P50431 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Shmt1P50431 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Shmt1P50431 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Shmt1P50431 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Shmt1P50431 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Shmt1P50431 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Shmt1P50431 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Shmt1P50431 Gm9719-201ENSMUST00000162765 543 ntBASIC15.32■□□□□ 0.04
Shmt1P50431 Gm9856-201ENSMUST00000217077 2578 ntBASIC15.32■□□□□ 0.04
Shmt1P50431 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Shmt1P50431 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Shmt1P50431 Gm13127-201ENSMUST00000118978 1389 ntBASIC15.32■□□□□ 0.04
Shmt1P50431 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Shmt1P50431 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Shmt1P50431 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Shmt1P50431 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Shmt1P50431 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Shmt1P50431 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shmt1P50431 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shmt1P50431 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Shmt1P50431 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shmt1P50431 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shmt1P50431 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shmt1P50431 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shmt1P50431 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Shmt1P50431 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shmt1P50431 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shmt1P50431 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shmt1P50431 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC15.31■□□□□ 0.04
Shmt1P50431 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shmt1P50431 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shmt1P50431 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC15.31■□□□□ 0.04
Shmt1P50431 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shmt1P50431 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shmt1P50431 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Shmt1P50431 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shmt1P50431 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Shmt1P50431 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shmt1P50431 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Shmt1P50431 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms