Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC17.36■□□□□ 0.37
Rfx1P48377 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC17.36■□□□□ 0.37
Rfx1P48377 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 AC154757.1-201ENSMUST00000228289 336 ntBASIC17.36■□□□□ 0.37
Rfx1P48377 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Rfx1P48377 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC17.36■□□□□ 0.37
Rfx1P48377 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC17.36■□□□□ 0.37
Rfx1P48377 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC17.36■□□□□ 0.37
Rfx1P48377 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Ssr1-204ENSMUST00000225319 1610 ntBASIC17.36■□□□□ 0.37
Rfx1P48377 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Rfx1P48377 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Rfx1P48377 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx1P48377 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx1P48377 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx1P48377 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC17.35■□□□□ 0.37
Rfx1P48377 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Rfx1P48377 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Rfx1P48377 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx1P48377 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Rfx1P48377 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx1P48377 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx1P48377 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx1P48377 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx1P48377 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx1P48377 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx1P48377 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC17.35■□□□□ 0.37
Rfx1P48377 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC17.35■□□□□ 0.37
Rfx1P48377 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Rfx1P48377 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx1P48377 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx1P48377 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx1P48377 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx1P48377 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx1P48377 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx1P48377 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Rfx1P48377 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx1P48377 Tcf21-202ENSMUST00000218002 1788 ntBASIC17.35■□□□□ 0.37
Rfx1P48377 AC126250.1-201ENSMUST00000228343 1768 ntBASIC17.35■□□□□ 0.37
Rfx1P48377 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC17.35■□□□□ 0.37
Rfx1P48377 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx1P48377 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx1P48377 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Rfx1P48377 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC17.35■□□□□ 0.37
Rfx1P48377 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Rfx1P48377 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx1P48377 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Rfx1P48377 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Rfx1P48377 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx1P48377 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx1P48377 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
Rfx1P48377 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx1P48377 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx1P48377 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx1P48377 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx1P48377 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC17.34■□□□□ 0.37
Rfx1P48377 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC17.34■□□□□ 0.37
Rfx1P48377 Gm26513-201ENSMUST00000181802 2489 ntBASIC17.34■□□□□ 0.37
Rfx1P48377 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC17.34■□□□□ 0.37
Rfx1P48377 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC17.34■□□□□ 0.37
Rfx1P48377 Gm44487-201ENSMUST00000205145 325 ntBASIC17.34■□□□□ 0.37
Rfx1P48377 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx1P48377 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx1P48377 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx1P48377 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx1P48377 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
Rfx1P48377 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx1P48377 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
Rfx1P48377 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Rfx1P48377 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx1P48377 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Rfx1P48377 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
Rfx1P48377 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Rfx1P48377 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Rfx1P48377 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Rfx1P48377 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Rfx1P48377 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Rfx1P48377 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Rfx1P48377 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Rfx1P48377 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Rfx1P48377 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rfx1P48377 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rfx1P48377 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Rfx1P48377 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rfx1P48377 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Rfx1P48377 Gm9726-201ENSMUST00000180321 678 ntBASIC17.33■□□□□ 0.36
Rfx1P48377 Gm18246-201ENSMUST00000221023 728 ntBASIC17.33■□□□□ 0.36
Rfx1P48377 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms