Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC18.88■□□□□ 0.61
Col18a1P39061 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Col18a1P39061 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Col18a1P39061 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Col18a1P39061 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col18a1P39061 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col18a1P39061 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Col18a1P39061 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col18a1P39061 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Col18a1P39061 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC18.88■□□□□ 0.61
Col18a1P39061 Gm15782-201ENSMUST00000121073 445 ntBASIC18.88■□□□□ 0.61
Col18a1P39061 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col18a1P39061 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Col18a1P39061 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col18a1P39061 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Col18a1P39061 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col18a1P39061 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col18a1P39061 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col18a1P39061 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col18a1P39061 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col18a1P39061 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col18a1P39061 Gm11618-201ENSMUST00000117946 267 ntBASIC18.87■□□□□ 0.61
Col18a1P39061 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC18.87■□□□□ 0.61
Col18a1P39061 Gm16379-201ENSMUST00000161469 348 ntBASIC18.87■□□□□ 0.61
Col18a1P39061 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
Col18a1P39061 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Col18a1P39061 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC18.87■□□□□ 0.61
Col18a1P39061 Gm8762-201ENSMUST00000193486 339 ntBASIC18.87■□□□□ 0.61
Col18a1P39061 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Col18a1P39061 AC122371.3-201ENSMUST00000223402 1061 ntBASIC18.87■□□□□ 0.61
Col18a1P39061 CT030182.1-201ENSMUST00000225935 533 ntBASIC18.87■□□□□ 0.61
Col18a1P39061 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col18a1P39061 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col18a1P39061 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Col18a1P39061 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC18.87■□□□□ 0.61
Col18a1P39061 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col18a1P39061 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col18a1P39061 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Col18a1P39061 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
Col18a1P39061 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Col18a1P39061 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col18a1P39061 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Col18a1P39061 Ssr1-204ENSMUST00000225319 1610 ntBASIC18.86■□□□□ 0.61
Col18a1P39061 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col18a1P39061 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC18.86■□□□□ 0.61
Col18a1P39061 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC18.86■□□□□ 0.61
Col18a1P39061 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
Col18a1P39061 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC18.86■□□□□ 0.61
Col18a1P39061 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col18a1P39061 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col18a1P39061 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col18a1P39061 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col18a1P39061 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC18.86■□□□□ 0.61
Col18a1P39061 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col18a1P39061 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Col18a1P39061 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col18a1P39061 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col18a1P39061 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC18.86■□□□□ 0.61
Col18a1P39061 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col18a1P39061 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC18.86■□□□□ 0.61
Col18a1P39061 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Col18a1P39061 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col18a1P39061 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC18.85■□□□□ 0.61
Col18a1P39061 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col18a1P39061 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC18.85■□□□□ 0.61
Col18a1P39061 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col18a1P39061 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col18a1P39061 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col18a1P39061 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col18a1P39061 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC18.85■□□□□ 0.61
Col18a1P39061 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col18a1P39061 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC18.85■□□□□ 0.61
Col18a1P39061 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Col18a1P39061 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col18a1P39061 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Col18a1P39061 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC18.85■□□□□ 0.61
Col18a1P39061 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col18a1P39061 Gm4986-201ENSMUST00000119731 549 ntBASIC18.84■□□□□ 0.61
Col18a1P39061 Gm9431-201ENSMUST00000119765 1051 ntBASIC18.84■□□□□ 0.61
Col18a1P39061 Gm25668-201ENSMUST00000157700 129 ntBASIC18.84■□□□□ 0.61
Col18a1P39061 Gm29237-201ENSMUST00000186216 448 ntTSL 5 BASIC18.84■□□□□ 0.61
Col18a1P39061 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC18.84■□□□□ 0.61
Col18a1P39061 Gm17870-201ENSMUST00000219489 1174 ntBASIC18.84■□□□□ 0.61
Col18a1P39061 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col18a1P39061 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col18a1P39061 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col18a1P39061 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col18a1P39061 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Col18a1P39061 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Col18a1P39061 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Col18a1P39061 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col18a1P39061 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col18a1P39061 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Col18a1P39061 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC18.84■□□□□ 0.61
Col18a1P39061 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Col18a1P39061 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Col18a1P39061 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col18a1P39061 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col18a1P39061 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col18a1P39061 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 51.4 ms