Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Msx1P13297 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Gm21009-201ENSMUST00000197169 1669 ntBASIC13.79□□□□□ -0.2
Msx1P13297 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC13.79□□□□□ -0.2
Msx1P13297 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
Msx1P13297 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Gm14913-201ENSMUST00000120011 1093 ntBASIC13.79□□□□□ -0.2
Msx1P13297 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC13.79□□□□□ -0.2
Msx1P13297 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Gm42726-201ENSMUST00000202274 1286 ntTSL 5 BASIC13.79□□□□□ -0.2
Msx1P13297 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC13.79□□□□□ -0.2
Msx1P13297 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Gm43598-201ENSMUST00000202482 2479 ntBASIC13.79□□□□□ -0.2
Msx1P13297 Cd59a-201ENSMUST00000040423 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Msx1P13297 Gm37305-201ENSMUST00000195714 4279 ntBASIC13.78□□□□□ -0.2
Msx1P13297 Gm45605-201ENSMUST00000210265 4269 ntBASIC13.78□□□□□ -0.2
Msx1P13297 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
Msx1P13297 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Msx1P13297 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
Msx1P13297 Gm2810-201ENSMUST00000118681 990 ntBASIC13.78□□□□□ -0.2
Msx1P13297 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC13.78□□□□□ -0.2
Msx1P13297 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC13.78□□□□□ -0.2
Msx1P13297 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC13.78□□□□□ -0.2
Msx1P13297 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC13.78□□□□□ -0.2
Msx1P13297 Olfr1248-201ENSMUST00000216129 1078 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Msx1P13297 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC13.78□□□□□ -0.2
Msx1P13297 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC13.78□□□□□ -0.2
Msx1P13297 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Msx1P13297 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Msx1P13297 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Msx1P13297 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Msx1P13297 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Msx1P13297 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Msx1P13297 Gm8410-201ENSMUST00000117225 605 ntBASIC13.77□□□□□ -0.21
Msx1P13297 Gm11543-201ENSMUST00000120758 370 ntBASIC13.77□□□□□ -0.21
Msx1P13297 Gm16178-201ENSMUST00000129408 677 ntTSL 2 BASIC13.77□□□□□ -0.21
Msx1P13297 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Msx1P13297 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC13.77□□□□□ -0.21
Msx1P13297 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Msx1P13297 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
Msx1P13297 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Msx1P13297 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Msx1P13297 Gm6358-202ENSMUST00000187643 489 ntAPPRIS P5 BASIC13.77□□□□□ -0.21
Msx1P13297 Gm38058-201ENSMUST00000194323 4368 ntBASIC13.77□□□□□ -0.21
Msx1P13297 Gm37728-201ENSMUST00000195025 2292 ntBASIC13.77□□□□□ -0.21
Msx1P13297 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Msx1P13297 Gm43275-201ENSMUST00000202053 1020 ntBASIC13.77□□□□□ -0.21
Msx1P13297 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC13.77□□□□□ -0.21
Msx1P13297 Gm45696-201ENSMUST00000212088 985 ntBASIC13.77□□□□□ -0.21
Msx1P13297 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Msx1P13297 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC13.77□□□□□ -0.21
Msx1P13297 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Msx1P13297 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Msx1P13297 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Msx1P13297 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Msx1P13297 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Msx1P13297 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Msx1P13297 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms