Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col1a1P11087 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col1a1P11087 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col1a1P11087 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col1a1P11087 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col1a1P11087 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Col1a1P11087 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col1a1P11087 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Col1a1P11087 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col1a1P11087 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col1a1P11087 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col1a1P11087 AC174678.1-201ENSMUST00000228007 2749 ntBASIC16.79■□□□□ 0.28
Col1a1P11087 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col1a1P11087 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col1a1P11087 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col1a1P11087 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col1a1P11087 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC16.79■□□□□ 0.28
Col1a1P11087 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC16.79■□□□□ 0.28
Col1a1P11087 Gm43094-201ENSMUST00000196549 921 ntBASIC16.79■□□□□ 0.28
Col1a1P11087 Gm18027-201ENSMUST00000218947 619 ntBASIC16.79■□□□□ 0.28
Col1a1P11087 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col1a1P11087 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col1a1P11087 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC16.78■□□□□ 0.28
Col1a1P11087 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Col1a1P11087 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Col1a1P11087 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col1a1P11087 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
Col1a1P11087 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col1a1P11087 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC16.78■□□□□ 0.28
Col1a1P11087 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Col1a1P11087 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Col1a1P11087 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC16.78■□□□□ 0.28
Col1a1P11087 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
Col1a1P11087 Gm27847-201ENSMUST00000183711 107 ntBASIC16.78■□□□□ 0.28
Col1a1P11087 Gm27375-201ENSMUST00000183799 107 ntBASIC16.78■□□□□ 0.28
Col1a1P11087 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC16.78■□□□□ 0.28
Col1a1P11087 Gm42442-201ENSMUST00000197951 1133 ntBASIC16.78■□□□□ 0.28
Col1a1P11087 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC16.78■□□□□ 0.28
Col1a1P11087 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col1a1P11087 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col1a1P11087 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Col1a1P11087 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
Col1a1P11087 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col1a1P11087 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col1a1P11087 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col1a1P11087 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col1a1P11087 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col1a1P11087 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col1a1P11087 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC16.77■□□□□ 0.28
Col1a1P11087 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col1a1P11087 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col1a1P11087 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC16.77■□□□□ 0.28
Col1a1P11087 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col1a1P11087 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col1a1P11087 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Col1a1P11087 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col1a1P11087 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Col1a1P11087 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.28
Col1a1P11087 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Col1a1P11087 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC16.77■□□□□ 0.28
Col1a1P11087 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC16.77■□□□□ 0.28
Col1a1P11087 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC16.77■□□□□ 0.28
Col1a1P11087 Gm43179-201ENSMUST00000198797 275 ntBASIC16.77■□□□□ 0.28
Col1a1P11087 AC159896.2-201ENSMUST00000214753 269 ntBASIC16.77■□□□□ 0.28
Col1a1P11087 Gm6983-201ENSMUST00000214912 628 ntBASIC16.77■□□□□ 0.28
Col1a1P11087 AC154319.1-201ENSMUST00000216330 312 ntBASIC16.77■□□□□ 0.28
Col1a1P11087 AL589735.1-201ENSMUST00000224353 270 ntBASIC16.77■□□□□ 0.28
Col1a1P11087 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col1a1P11087 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Col1a1P11087 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col1a1P11087 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col1a1P11087 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col1a1P11087 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.27
Col1a1P11087 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Col1a1P11087 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
Col1a1P11087 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Col1a1P11087 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col1a1P11087 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Col1a1P11087 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col1a1P11087 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col1a1P11087 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col1a1P11087 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC16.76■□□□□ 0.27
Col1a1P11087 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
Col1a1P11087 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC16.76■□□□□ 0.27
Col1a1P11087 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Col1a1P11087 Gm9299-201ENSMUST00000206392 1140 ntBASIC16.76■□□□□ 0.27
Col1a1P11087 AC154171.1-201ENSMUST00000224610 643 ntBASIC16.76■□□□□ 0.27
Col1a1P11087 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col1a1P11087 Gm13050-201ENSMUST00000122149 1345 ntBASIC16.76■□□□□ 0.27
Col1a1P11087 Gm42853-201ENSMUST00000201273 1387 ntBASIC16.76■□□□□ 0.27
Col1a1P11087 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col1a1P11087 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col1a1P11087 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC16.76■□□□□ 0.27
Col1a1P11087 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col1a1P11087 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col1a1P11087 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col1a1P11087 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col1a1P11087 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Col1a1P11087 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Col1a1P11087 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 48.9 ms