Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC13.17□□□□□ -0.3
Lmx1bO88609 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Lmx1bO88609 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Gm43195-201ENSMUST00000200614 2332 ntBASIC13.17□□□□□ -0.3
Lmx1bO88609 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC13.17□□□□□ -0.3
Lmx1bO88609 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
Lmx1bO88609 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Lmx1bO88609 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Gm8410-201ENSMUST00000117225 605 ntBASIC13.17□□□□□ -0.3
Lmx1bO88609 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC13.17□□□□□ -0.3
Lmx1bO88609 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
Lmx1bO88609 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Lmx1bO88609 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
Lmx1bO88609 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
Lmx1bO88609 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC13.17□□□□□ -0.3
Lmx1bO88609 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC13.17□□□□□ -0.3
Lmx1bO88609 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC13.17□□□□□ -0.3
Lmx1bO88609 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Lmx1bO88609 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Lmx1bO88609 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC13.17□□□□□ -0.3
Lmx1bO88609 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Lmx1bO88609 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Lmx1bO88609 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Gm13517-201ENSMUST00000120782 1495 ntBASIC13.16□□□□□ -0.3
Lmx1bO88609 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 AC159621.2-201ENSMUST00000223519 1326 ntBASIC13.16□□□□□ -0.3
Lmx1bO88609 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Lmx1bO88609 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Lmx1bO88609 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Lmx1bO88609 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Lmx1bO88609 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Lmx1bO88609 Gm13223-201ENSMUST00000118609 747 ntBASIC13.16□□□□□ -0.3
Lmx1bO88609 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC13.16□□□□□ -0.3
Lmx1bO88609 Gm27321-201ENSMUST00000185021 205 ntBASIC13.16□□□□□ -0.3
Lmx1bO88609 Gm17837-201ENSMUST00000186435 985 ntBASIC13.16□□□□□ -0.3
Lmx1bO88609 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Gm29541-201ENSMUST00000191351 678 ntBASIC13.16□□□□□ -0.3
Lmx1bO88609 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC13.16□□□□□ -0.3
Lmx1bO88609 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Lmx1bO88609 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Lmx1bO88609 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Tcf21-202ENSMUST00000218002 1788 ntBASIC13.16□□□□□ -0.3
Lmx1bO88609 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC13.16□□□□□ -0.3
Lmx1bO88609 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Gm43697-201ENSMUST00000199637 2581 ntBASIC13.16□□□□□ -0.3
Lmx1bO88609 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Lmx1bO88609 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Lmx1bO88609 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC13.16□□□□□ -0.3
Lmx1bO88609 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lmx1bO88609 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC13.15□□□□□ -0.3
Lmx1bO88609 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lmx1bO88609 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lmx1bO88609 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC13.15□□□□□ -0.3
Lmx1bO88609 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lmx1bO88609 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lmx1bO88609 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Lmx1bO88609 Gm45504-201ENSMUST00000211407 2107 ntBASIC13.15□□□□□ -0.3
Lmx1bO88609 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lmx1bO88609 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Lmx1bO88609 Gm43509-201ENSMUST00000196551 2594 ntBASIC13.15□□□□□ -0.3
Lmx1bO88609 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Lmx1bO88609 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC13.15□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms