Protein–RNA interactions for Protein: E9Q735

Ube4a, Ubiquitin conjugation factor E4 A, mousemouse

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4aE9Q735 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ube4aE9Q735 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ube4aE9Q735 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC17.37■□□□□ 0.37
Ube4aE9Q735 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC17.37■□□□□ 0.37
Ube4aE9Q735 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ube4aE9Q735 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ube4aE9Q735 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
Ube4aE9Q735 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC17.37■□□□□ 0.37
Ube4aE9Q735 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ube4aE9Q735 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ube4aE9Q735 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ube4aE9Q735 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ube4aE9Q735 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Ptprs-211ENSMUST00000223859 5588 ntBASIC17.36■□□□□ 0.37
Ube4aE9Q735 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Ldha-ps-201ENSMUST00000119390 995 ntBASIC17.36■□□□□ 0.37
Ube4aE9Q735 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Gm19220-201ENSMUST00000222682 803 ntBASIC17.36■□□□□ 0.37
Ube4aE9Q735 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ube4aE9Q735 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Gm12138-201ENSMUST00000122180 951 ntBASIC17.35■□□□□ 0.37
Ube4aE9Q735 Gm6283-201ENSMUST00000182369 1000 ntBASIC17.35■□□□□ 0.37
Ube4aE9Q735 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ube4aE9Q735 Carlr-201ENSMUST00000181515 2574 ntBASIC17.35■□□□□ 0.37
Ube4aE9Q735 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Gm14452-201ENSMUST00000118680 1632 ntBASIC17.34■□□□□ 0.37
Ube4aE9Q735 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Gm14451-201ENSMUST00000121581 1542 ntBASIC17.34■□□□□ 0.37
Ube4aE9Q735 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Gm4804-201ENSMUST00000182234 999 ntBASIC17.34■□□□□ 0.37
Ube4aE9Q735 Mir6392-201ENSMUST00000184924 108 ntBASIC17.34■□□□□ 0.37
Ube4aE9Q735 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Gm44608-201ENSMUST00000206827 855 ntBASIC17.34■□□□□ 0.37
Ube4aE9Q735 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC17.34■□□□□ 0.37
Ube4aE9Q735 AC139580.1-202ENSMUST00000223574 928 ntBASIC17.34■□□□□ 0.37
Ube4aE9Q735 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ube4aE9Q735 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms