Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Trim3Q9R1R2 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Trim3Q9R1R2 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Gm27301-201ENSMUST00000184012 127 ntBASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Gm43767-201ENSMUST00000198933 381 ntBASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Thap2-203ENSMUST00000218989 527 ntBASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 AC025913.2-201ENSMUST00000220136 1766 ntBASIC13.7□□□□□ -0.22
Trim3Q9R1R2 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Trim3Q9R1R2 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Gm43697-201ENSMUST00000199637 2581 ntBASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Gm6736-201ENSMUST00000166583 948 ntBASIC13.69□□□□□ -0.22
Trim3Q9R1R2 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Gm15500-202ENSMUST00000071641 1019 ntBASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Fbxl12-205ENSMUST00000140702 1555 ntBASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Gm21451-201ENSMUST00000111062 2775 ntBASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Trim3Q9R1R2 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Trim3Q9R1R2 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim3Q9R1R2 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Trim3Q9R1R2 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim3Q9R1R2 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim3Q9R1R2 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim3Q9R1R2 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim3Q9R1R2 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim3Q9R1R2 Gm12892-201ENSMUST00000117367 1146 ntBASIC13.68□□□□□ -0.22
Trim3Q9R1R2 Gm14822-201ENSMUST00000122247 291 ntBASIC13.68□□□□□ -0.22
Trim3Q9R1R2 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim3Q9R1R2 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC13.68□□□□□ -0.22
Trim3Q9R1R2 Gm2272-201ENSMUST00000194903 582 ntBASIC13.68□□□□□ -0.22
Trim3Q9R1R2 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Trim3Q9R1R2 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC13.68□□□□□ -0.22
Trim3Q9R1R2 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim3Q9R1R2 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Trim3Q9R1R2 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 47.2 ms