Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Smc1aQ9CU62 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC16.28■□□□□ 0.2
Smc1aQ9CU62 AC127302.2-201ENSMUST00000215212 268 ntBASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Smc1aQ9CU62 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Gm13365-201ENSMUST00000121188 973 ntBASIC16.27■□□□□ 0.2
Smc1aQ9CU62 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Smc1aQ9CU62 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Gm44335-201ENSMUST00000196879 141 ntBASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Gm44297-201ENSMUST00000198304 141 ntBASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Gm44346-201ENSMUST00000198851 141 ntBASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Smc1aQ9CU62 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Smc1aQ9CU62 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Smc1aQ9CU62 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC16.27■□□□□ 0.19
Smc1aQ9CU62 Gm37691-201ENSMUST00000192147 2573 ntBASIC16.27■□□□□ 0.19
Smc1aQ9CU62 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Smc1aQ9CU62 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Smc1aQ9CU62 Grk6-207ENSMUST00000225925 2769 ntBASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Gm13332-201ENSMUST00000120451 1398 ntBASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Smc1aQ9CU62 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Gm6226-201ENSMUST00000117765 1146 ntBASIC16.26■□□□□ 0.19
Smc1aQ9CU62 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Smc1aQ9CU62 AA543401-201ENSMUST00000164248 1269 ntBASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Thap2-203ENSMUST00000218989 527 ntBASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
Smc1aQ9CU62 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Smc1aQ9CU62 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 AC119177.1-201ENSMUST00000227647 1332 ntBASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 CT030684.3-201ENSMUST00000227308 2445 ntBASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Smc1aQ9CU62 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms