Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 Gm8668-201ENSMUST00000120559 1447 ntBASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 AC126250.1-201ENSMUST00000228343 1768 ntBASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc9Q8VC31 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ccdc9Q8VC31 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ccdc9Q8VC31 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ccdc9Q8VC31 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ccdc9Q8VC31 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ccdc9Q8VC31 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ccdc9Q8VC31 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ccdc9Q8VC31 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ccdc9Q8VC31 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC17.52■□□□□ 0.4
Ccdc9Q8VC31 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Ccdc9Q8VC31 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Ccdc9Q8VC31 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Ccdc9Q8VC31 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Ccdc9Q8VC31 Gm29994-201ENSMUST00000195495 1193 ntBASIC17.52■□□□□ 0.4
Ccdc9Q8VC31 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC17.52■□□□□ 0.4
Ccdc9Q8VC31 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ccdc9Q8VC31 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ccdc9Q8VC31 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Ccdc9Q8VC31 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ccdc9Q8VC31 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ccdc9Q8VC31 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Ccdc9Q8VC31 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ccdc9Q8VC31 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ccdc9Q8VC31 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Ccdc9Q8VC31 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ccdc9Q8VC31 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ccdc9Q8VC31 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ccdc9Q8VC31 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ccdc9Q8VC31 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Ccdc9Q8VC31 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Gm5639-201ENSMUST00000122305 2403 ntBASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Mir5130-201ENSMUST00000175160 84 ntBASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Mir1668-201ENSMUST00000184114 107 ntBASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Gm7889-201ENSMUST00000185591 958 ntBASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Paupar-201ENSMUST00000194826 3482 ntBASIC17.51■□□□□ 0.39
Ccdc9Q8VC31 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Gm7367-201ENSMUST00000057611 492 ntBASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Ccdc9Q8VC31 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ccdc9Q8VC31 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ccdc9Q8VC31 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ccdc9Q8VC31 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Ccdc9Q8VC31 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ccdc9Q8VC31 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ccdc9Q8VC31 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Ccdc9Q8VC31 Gm13186-201ENSMUST00000118031 316 ntBASIC17.49■□□□□ 0.39
Ccdc9Q8VC31 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Ccdc9Q8VC31 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Ccdc9Q8VC31 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC17.49■□□□□ 0.39
Ccdc9Q8VC31 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms