Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Gm44443-201ENSMUST00000204396 5633 ntBASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim47Q8C0E3 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Gm20949-201ENSMUST00000206478 952 ntBASIC16.11■□□□□ 0.17
Trim47Q8C0E3 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 AC126408.1-201ENSMUST00000225184 523 ntBASIC16.11■□□□□ 0.17
Trim47Q8C0E3 AC158982.1-201ENSMUST00000228377 901 ntBASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC16.11■□□□□ 0.17
Trim47Q8C0E3 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Gm9252-201ENSMUST00000172364 1602 ntBASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Gm17837-201ENSMUST00000186435 985 ntBASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim47Q8C0E3 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Gm6888-201ENSMUST00000221983 706 ntBASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Trim47Q8C0E3 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms