Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim56Q80VI1 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim56Q80VI1 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trim56Q80VI1 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.34
Trim56Q80VI1 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC17.14■□□□□ 0.34
Trim56Q80VI1 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Trim56Q80VI1 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.34
Trim56Q80VI1 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim56Q80VI1 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim56Q80VI1 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim56Q80VI1 Ap5m1-205ENSMUST00000227431 3757 ntBASIC17.14■□□□□ 0.33
Trim56Q80VI1 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim56Q80VI1 Gm9719-201ENSMUST00000162765 543 ntBASIC17.14■□□□□ 0.33
Trim56Q80VI1 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
Trim56Q80VI1 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim56Q80VI1 AC123645.1-201ENSMUST00000228469 605 ntBASIC17.14■□□□□ 0.33
Trim56Q80VI1 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim56Q80VI1 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC17.14■□□□□ 0.33
Trim56Q80VI1 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim56Q80VI1 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim56Q80VI1 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim56Q80VI1 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC17.14■□□□□ 0.33
Trim56Q80VI1 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim56Q80VI1 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trim56Q80VI1 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trim56Q80VI1 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim56Q80VI1 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Gm8410-201ENSMUST00000117225 605 ntBASIC17.13■□□□□ 0.33
Trim56Q80VI1 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Gm27622-201ENSMUST00000183779 60 ntBASIC17.13■□□□□ 0.33
Trim56Q80VI1 Gm27631-201ENSMUST00000184163 466 ntBASIC17.13■□□□□ 0.33
Trim56Q80VI1 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim56Q80VI1 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trim56Q80VI1 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim56Q80VI1 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim56Q80VI1 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC17.12■□□□□ 0.33
Trim56Q80VI1 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Trim56Q80VI1 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC17.12■□□□□ 0.33
Trim56Q80VI1 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim56Q80VI1 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC17.12■□□□□ 0.33
Trim56Q80VI1 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC17.12■□□□□ 0.33
Trim56Q80VI1 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim56Q80VI1 Gm12428-201ENSMUST00000119844 727 ntBASIC17.12■□□□□ 0.33
Trim56Q80VI1 Gm6222-201ENSMUST00000120787 396 ntBASIC17.12■□□□□ 0.33
Trim56Q80VI1 Gm44872-201ENSMUST00000207864 420 ntBASIC17.12■□□□□ 0.33
Trim56Q80VI1 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim56Q80VI1 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Trim56Q80VI1 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim56Q80VI1 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim56Q80VI1 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim56Q80VI1 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim56Q80VI1 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trim56Q80VI1 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Trim56Q80VI1 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trim56Q80VI1 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim56Q80VI1 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim56Q80VI1 Gm43697-201ENSMUST00000199637 2581 ntBASIC17.11■□□□□ 0.33
Trim56Q80VI1 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim56Q80VI1 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim56Q80VI1 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim56Q80VI1 Gm14042-201ENSMUST00000120139 833 ntBASIC17.11■□□□□ 0.33
Trim56Q80VI1 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim56Q80VI1 Gm25925-201ENSMUST00000158314 306 ntBASIC17.11■□□□□ 0.33
Trim56Q80VI1 Cend1-204ENSMUST00000164387 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim56Q80VI1 Auts2-212ENSMUST00000178555 309 ntBASIC17.11■□□□□ 0.33
Trim56Q80VI1 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim56Q80VI1 Gm27533-201ENSMUST00000183800 152 ntBASIC17.11■□□□□ 0.33
Trim56Q80VI1 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim56Q80VI1 AC159114.1-201ENSMUST00000220349 266 ntBASIC17.11■□□□□ 0.33
Trim56Q80VI1 AC126408.1-201ENSMUST00000225184 523 ntBASIC17.11■□□□□ 0.33
Trim56Q80VI1 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim56Q80VI1 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trim56Q80VI1 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trim56Q80VI1 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms