Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
ClpbQ60649 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
ClpbQ60649 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
ClpbQ60649 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
ClpbQ60649 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
ClpbQ60649 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC13.97□□□□□ -0.17
ClpbQ60649 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
ClpbQ60649 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
ClpbQ60649 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC13.97□□□□□ -0.17
ClpbQ60649 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
ClpbQ60649 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC13.97□□□□□ -0.17
ClpbQ60649 Rprl2-201ENSMUST00000157150 290 ntBASIC13.97□□□□□ -0.17
ClpbQ60649 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC13.97□□□□□ -0.17
ClpbQ60649 Rpph1-201ENSMUST00000175096 319 ntBASIC13.97□□□□□ -0.17
ClpbQ60649 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC13.97□□□□□ -0.17
ClpbQ60649 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC13.97□□□□□ -0.17
ClpbQ60649 AC155252.2-201ENSMUST00000226946 680 ntBASIC13.97□□□□□ -0.17
ClpbQ60649 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
ClpbQ60649 Gpr146-202ENSMUST00000053120 1040 ntBASIC13.97□□□□□ -0.17
ClpbQ60649 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
ClpbQ60649 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
ClpbQ60649 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
ClpbQ60649 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC13.97□□□□□ -0.17
ClpbQ60649 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
ClpbQ60649 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
ClpbQ60649 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC13.97□□□□□ -0.17
ClpbQ60649 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
ClpbQ60649 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
ClpbQ60649 AC167013.2-201ENSMUST00000228520 2684 ntBASIC13.97□□□□□ -0.17
ClpbQ60649 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
ClpbQ60649 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
ClpbQ60649 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
ClpbQ60649 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
ClpbQ60649 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
ClpbQ60649 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
ClpbQ60649 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
ClpbQ60649 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
ClpbQ60649 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
ClpbQ60649 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
ClpbQ60649 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
ClpbQ60649 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
ClpbQ60649 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
ClpbQ60649 Gm9385-201ENSMUST00000117563 472 ntBASIC13.96□□□□□ -0.17
ClpbQ60649 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC13.96□□□□□ -0.17
ClpbQ60649 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
ClpbQ60649 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC13.96□□□□□ -0.17
ClpbQ60649 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC13.96□□□□□ -0.17
ClpbQ60649 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC13.96□□□□□ -0.17
ClpbQ60649 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
ClpbQ60649 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
ClpbQ60649 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
ClpbQ60649 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
ClpbQ60649 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
ClpbQ60649 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
ClpbQ60649 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
ClpbQ60649 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC13.96□□□□□ -0.18
ClpbQ60649 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
ClpbQ60649 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.18
ClpbQ60649 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
ClpbQ60649 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
ClpbQ60649 AC126250.1-201ENSMUST00000228343 1768 ntBASIC13.96□□□□□ -0.18
ClpbQ60649 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
ClpbQ60649 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
ClpbQ60649 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
ClpbQ60649 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC13.96□□□□□ -0.18
ClpbQ60649 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC13.95□□□□□ -0.18
ClpbQ60649 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ClpbQ60649 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ClpbQ60649 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
ClpbQ60649 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC13.95□□□□□ -0.18
ClpbQ60649 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
ClpbQ60649 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
ClpbQ60649 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
ClpbQ60649 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
ClpbQ60649 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC13.95□□□□□ -0.18
ClpbQ60649 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC13.95□□□□□ -0.18
ClpbQ60649 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC13.95□□□□□ -0.18
ClpbQ60649 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ClpbQ60649 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ClpbQ60649 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
ClpbQ60649 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
ClpbQ60649 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
ClpbQ60649 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC13.95□□□□□ -0.18
ClpbQ60649 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
ClpbQ60649 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
ClpbQ60649 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ClpbQ60649 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
ClpbQ60649 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC13.95□□□□□ -0.18
ClpbQ60649 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
ClpbQ60649 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC13.95□□□□□ -0.18
ClpbQ60649 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
ClpbQ60649 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
ClpbQ60649 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
ClpbQ60649 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 72.1 ms