Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Gm27631-201ENSMUST00000184163 466 ntBASIC12.55□□□□□ -0.4
Nkx3-1P97436 Gm6473-201ENSMUST00000188572 1210 ntBASIC12.55□□□□□ -0.4
Nkx3-1P97436 Gm6218-201ENSMUST00000219812 628 ntBASIC12.55□□□□□ -0.4
Nkx3-1P97436 Dupd1-202ENSMUST00000224735 548 ntBASIC12.55□□□□□ -0.4
Nkx3-1P97436 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC12.55□□□□□ -0.4
Nkx3-1P97436 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC12.54□□□□□ -0.4
Nkx3-1P97436 AC149588.3-201ENSMUST00000227515 150 ntBASIC12.54□□□□□ -0.4
Nkx3-1P97436 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx3-1P97436 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Nkx3-1P97436 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx3-1P97436 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx3-1P97436 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx3-1P97436 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx3-1P97436 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx3-1P97436 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx3-1P97436 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx3-1P97436 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx3-1P97436 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx3-1P97436 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx3-1P97436 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx3-1P97436 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx3-1P97436 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx3-1P97436 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx3-1P97436 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx3-1P97436 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Nkx3-1P97436 Gm8749-201ENSMUST00000117737 331 ntBASIC12.53□□□□□ -0.4
Nkx3-1P97436 Gm12859-201ENSMUST00000117834 427 ntBASIC12.53□□□□□ -0.4
Nkx3-1P97436 Gm4875-201ENSMUST00000118257 786 ntBASIC12.53□□□□□ -0.4
Nkx3-1P97436 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Nkx3-1P97436 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC12.53□□□□□ -0.4
Nkx3-1P97436 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx3-1P97436 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Nkx3-1P97436 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC12.53□□□□□ -0.4
Nkx3-1P97436 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx3-1P97436 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx3-1P97436 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Nkx3-1P97436 Gm43703-201ENSMUST00000200523 763 ntBASIC12.53□□□□□ -0.4
Nkx3-1P97436 Gm7653-201ENSMUST00000214567 508 ntBASIC12.53□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms