Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Shox2P70390 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Shox2P70390 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Shox2P70390 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC14.37□□□□□ -0.11
Shox2P70390 Gm37844-201ENSMUST00000192473 4097 ntBASIC14.37□□□□□ -0.11
Shox2P70390 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Shox2P70390 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Shox2P70390 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Shox2P70390 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Shox2P70390 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Shox2P70390 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC14.36□□□□□ -0.11
Shox2P70390 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shox2P70390 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
Shox2P70390 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC14.36□□□□□ -0.11
Shox2P70390 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Shox2P70390 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shox2P70390 Gm37795-201ENSMUST00000194216 2459 ntBASIC14.36□□□□□ -0.11
Shox2P70390 Gm7002-201ENSMUST00000221386 2165 ntBASIC14.36□□□□□ -0.11
Shox2P70390 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shox2P70390 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
Shox2P70390 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shox2P70390 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shox2P70390 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
Shox2P70390 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shox2P70390 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shox2P70390 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC14.36□□□□□ -0.11
Shox2P70390 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC14.36□□□□□ -0.11
Shox2P70390 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Shox2P70390 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shox2P70390 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC14.36□□□□□ -0.11
Shox2P70390 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shox2P70390 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shox2P70390 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Shox2P70390 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Shox2P70390 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shox2P70390 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shox2P70390 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
Shox2P70390 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shox2P70390 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shox2P70390 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC14.36□□□□□ -0.11
Shox2P70390 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shox2P70390 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shox2P70390 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Shox2P70390 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC14.35□□□□□ -0.11
Shox2P70390 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Shox2P70390 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Gm5837-201ENSMUST00000191844 1369 ntBASIC14.35□□□□□ -0.11
Shox2P70390 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC14.35□□□□□ -0.11
Shox2P70390 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Shox2P70390 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Mir3081-201ENSMUST00000175305 84 ntBASIC14.35□□□□□ -0.11
Shox2P70390 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
Shox2P70390 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC14.35□□□□□ -0.11
Shox2P70390 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Shox2P70390 Gm38355-201ENSMUST00000192514 1570 ntBASIC14.34□□□□□ -0.11
Shox2P70390 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shox2P70390 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shox2P70390 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shox2P70390 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shox2P70390 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
Shox2P70390 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shox2P70390 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shox2P70390 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shox2P70390 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shox2P70390 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Shox2P70390 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shox2P70390 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Shox2P70390 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Shox2P70390 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shox2P70390 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Shox2P70390 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Shox2P70390 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shox2P70390 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shox2P70390 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Shox2P70390 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC14.34□□□□□ -0.11
Shox2P70390 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Shox2P70390 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Shox2P70390 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC14.34□□□□□ -0.11
Shox2P70390 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms