Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Cdh11P55288 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Cdh11P55288 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC13.28□□□□□ -0.28
Cdh11P55288 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Cdh11P55288 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC13.28□□□□□ -0.28
Cdh11P55288 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC13.28□□□□□ -0.28
Cdh11P55288 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 AC225888.1-201ENSMUST00000227184 728 ntBASIC13.28□□□□□ -0.28
Cdh11P55288 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Cdh11P55288 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC13.28□□□□□ -0.28
Cdh11P55288 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC13.28□□□□□ -0.28
Cdh11P55288 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Cdh11P55288 Gm38391-201ENSMUST00000191720 4069 ntBASIC13.28□□□□□ -0.28
Cdh11P55288 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Cdh11P55288 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Cdh11P55288 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Cdh11P55288 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
Cdh11P55288 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Cdh11P55288 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC13.27□□□□□ -0.28
Cdh11P55288 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Cdh11P55288 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC13.27□□□□□ -0.28
Cdh11P55288 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Cdh11P55288 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Cdh11P55288 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Cdh11P55288 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Cdh11P55288 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
Cdh11P55288 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC13.27□□□□□ -0.28
Cdh11P55288 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Cdh11P55288 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Cdh11P55288 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Cdh11P55288 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Cdh11P55288 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Cdh11P55288 Gm14822-201ENSMUST00000122247 291 ntBASIC13.27□□□□□ -0.29
Cdh11P55288 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC13.27□□□□□ -0.29
Cdh11P55288 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Cdh11P55288 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Cdh11P55288 Gm5253-201ENSMUST00000187104 1025 ntBASIC13.27□□□□□ -0.29
Cdh11P55288 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC13.27□□□□□ -0.29
Cdh11P55288 AC122024.2-201ENSMUST00000220086 871 ntBASIC13.27□□□□□ -0.29
Cdh11P55288 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
Cdh11P55288 AC158538.2-201ENSMUST00000225455 906 ntBASIC13.27□□□□□ -0.29
Cdh11P55288 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Cdh11P55288 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Cdh11P55288 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Cdh11P55288 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Cdh11P55288 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Cdh11P55288 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC13.27□□□□□ -0.29
Cdh11P55288 Grk6-207ENSMUST00000225925 2769 ntBASIC13.27□□□□□ -0.29
Cdh11P55288 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Cdh11P55288 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
Cdh11P55288 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Cdh11P55288 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Cdh11P55288 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Cdh11P55288 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Cdh11P55288 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Cdh11P55288 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Cdh11P55288 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Cdh11P55288 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 R3hdm4-202ENSMUST00000171416 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Gm18489-201ENSMUST00000172565 551 ntBASIC13.26□□□□□ -0.29
Cdh11P55288 Gm24513-201ENSMUST00000174964 138 ntBASIC13.26□□□□□ -0.29
Cdh11P55288 Mir3113-201ENSMUST00000175478 76 ntBASIC13.26□□□□□ -0.29
Cdh11P55288 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Gm27397-201ENSMUST00000184997 107 ntBASIC13.26□□□□□ -0.29
Cdh11P55288 Gm2756-201ENSMUST00000195851 400 ntBASIC13.26□□□□□ -0.29
Cdh11P55288 Gm9682-201ENSMUST00000197505 556 ntBASIC13.26□□□□□ -0.29
Cdh11P55288 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Cdh11P55288 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Cdh11P55288 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 64.2 ms