Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cdx2P43241 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Cdx2P43241 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cdx2P43241 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cdx2P43241 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cdx2P43241 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC13.76□□□□□ -0.21
Cdx2P43241 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC13.76□□□□□ -0.21
Cdx2P43241 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Cdx2P43241 Gm5035-201ENSMUST00000215581 927 ntBASIC13.76□□□□□ -0.21
Cdx2P43241 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cdx2P43241 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cdx2P43241 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cdx2P43241 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC13.76□□□□□ -0.21
Cdx2P43241 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cdx2P43241 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cdx2P43241 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cdx2P43241 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Cdx2P43241 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cdx2P43241 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC13.76□□□□□ -0.21
Cdx2P43241 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cdx2P43241 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cdx2P43241 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Cdx2P43241 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Cdx2P43241 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Cdx2P43241 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Gm12341-201ENSMUST00000119724 503 ntBASIC13.75□□□□□ -0.21
Cdx2P43241 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Gm10275-202ENSMUST00000168697 495 ntBASIC13.75□□□□□ -0.21
Cdx2P43241 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC13.75□□□□□ -0.21
Cdx2P43241 Gm28911-201ENSMUST00000188837 117 ntBASIC13.75□□□□□ -0.21
Cdx2P43241 AC153872.1-201ENSMUST00000199539 128 ntBASIC13.75□□□□□ -0.21
Cdx2P43241 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC13.75□□□□□ -0.21
Cdx2P43241 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC13.75□□□□□ -0.21
Cdx2P43241 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC13.75□□□□□ -0.21
Cdx2P43241 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Gm9899-201ENSMUST00000065519 555 ntBASIC13.75□□□□□ -0.21
Cdx2P43241 Gm10275-201ENSMUST00000092620 635 ntBASIC13.75□□□□□ -0.21
Cdx2P43241 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
Cdx2P43241 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Cdx2P43241 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC13.75□□□□□ -0.21
Cdx2P43241 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC13.74□□□□□ -0.21
Cdx2P43241 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC13.74□□□□□ -0.21
Cdx2P43241 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC13.74□□□□□ -0.21
Cdx2P43241 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Cdx2P43241 Gm27701-201ENSMUST00000184498 110 ntBASIC13.74□□□□□ -0.21
Cdx2P43241 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC13.74□□□□□ -0.21
Cdx2P43241 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Cdx2P43241 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC13.74□□□□□ -0.21
Cdx2P43241 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Cdx2P43241 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
Cdx2P43241 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cdx2P43241 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cdx2P43241 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cdx2P43241 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Cdx2P43241 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Cdx2P43241 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cdx2P43241 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cdx2P43241 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms