Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdx1P18111 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdx1P18111 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Cdx1P18111 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdx1P18111 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdx1P18111 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdx1P18111 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdx1P18111 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Cdx1P18111 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Cdx1P18111 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdx1P18111 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdx1P18111 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Cdx1P18111 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Cdx1P18111 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdx1P18111 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Cdx1P18111 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC11.77□□□□□ -0.53
Cdx1P18111 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Cdx1P18111 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC11.77□□□□□ -0.53
Cdx1P18111 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdx1P18111 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Cdx1P18111 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC11.76□□□□□ -0.53
Cdx1P18111 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC11.76□□□□□ -0.53
Cdx1P18111 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC11.76□□□□□ -0.53
Cdx1P18111 Gm30437-201ENSMUST00000206086 1201 ntBASIC11.76□□□□□ -0.53
Cdx1P18111 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC11.76□□□□□ -0.53
Cdx1P18111 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC11.76□□□□□ -0.53
Cdx1P18111 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC11.76□□□□□ -0.53
Cdx1P18111 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Gm37644-201ENSMUST00000192190 2270 ntBASIC11.76□□□□□ -0.53
Cdx1P18111 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC11.76□□□□□ -0.53
Cdx1P18111 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Cdx1P18111 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Acot6-202ENSMUST00000222921 3622 ntBASIC11.75□□□□□ -0.53
Cdx1P18111 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Cdx1P18111 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC11.75□□□□□ -0.53
Cdx1P18111 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC11.75□□□□□ -0.53
Cdx1P18111 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC11.75□□□□□ -0.53
Cdx1P18111 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC11.75□□□□□ -0.53
Cdx1P18111 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC11.75□□□□□ -0.53
Cdx1P18111 Gm27867-201ENSMUST00000184778 125 ntBASIC11.75□□□□□ -0.53
Cdx1P18111 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Cdx1P18111 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Gm18856-201ENSMUST00000178096 1374 ntBASIC11.75□□□□□ -0.53
Cdx1P18111 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
Cdx1P18111 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Cdx1P18111 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC11.75□□□□□ -0.53
Cdx1P18111 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC11.75□□□□□ -0.53
Cdx1P18111 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Cdx1P18111 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms